RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NR1H3Q13133 447 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 LRRC32Q14392 662 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 MAN2A1Q16706 1144 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 EXOC3L4Q17RC7 722 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 GAB4Q2WGN9 574 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 VWA3BQ502W6 1294 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 MIIPQ5JXC2 388 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 DGKKQ5KSL6 1271 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 PM20D1Q6GTS8 502 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 RHBDF2Q6PJF5 856 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 TSSK4Q6SA08 328 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 GBP6Q6ZN66 633 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 Q6ZS52 159 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 DDX42Q86XP3 938 aaKnown RBP eCLIP15.81■□□□□ 0.12
VPS39-210ENST00000568357 FAM114A1Q8IWE2 563 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 ZNF276Q8N554 614 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 SLC35F5Q8WV83 523 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 TUBGCP2Q9BSJ2 902 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 FBXO4Q9UKT5 387 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.81■□□□□ 0.12
VPS39-210ENST00000568357 GTPBP10A4D1E9 387 aaKnown RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 SLC9A3R1O14745 358 aaPredicted RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 NFATC1O95644 943 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 ZBED1O96006 694 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 CYP17A1P05093 508 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 IRF1P10914 325 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 PLA2G4AP47712 749 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 PSEN1P49768 467 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 GRSF1Q12849 480 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS39-210ENST00000568357 DHCR24Q15392 516 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 C10orf120Q5SQS8 335 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 PMF1Q6P1K2 205 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 KLHDC10Q6PID8 442 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 BHLHA9Q7RTU4 235 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 BBS7Q8IWZ6 715 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 ENOX1Q8TC92 643 aaKnown RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 KCTD13Q8WZ19 329 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 EZH1Q92800 747 aaPredicted RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 SECISBP2LQ93073 1101 aaKnown RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 P2RY13Q9BPV8 354 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 ULBP1Q9BZM6 244 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 NDST4Q9H3R1 872 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 SIX2Q9NPC8 291 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 ACP6Q9NPH0 428 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 C2orf42Q9NWW7 574 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 CLIC5Q9NZA1 410 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 TBC1D14Q9P2M4 693 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 DNMT3LQ9UJW3 386 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 SH3BP1Q9Y3L3 701 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 CFAP47Q6ZTR5 3102 aa15.8■□□□□ 0.12
VPS39-210ENST00000568357 ZNF638Q14966 1978 aaKnown RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 KIF26AQ9ULI4 1882 aaPredicted RBP15.8■□□□□ 0.12
VPS39-210ENST00000568357 BECN2A8MW95 431 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 KCNJ18B7U540 433 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 MBD3O95983 291 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 EGFP01133 1207 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 SETSIPP0DME0 302 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 RALAP11233 206 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 KRT5P13647 590 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 PRKCSHP14314 528 aaPredicted RBP15.79■□□□□ 0.12
VPS39-210ENST00000568357 OPRD1P41143 372 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 MFAP3P55082 362 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 SATB1Q01826 763 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 KCNMA1Q12791 1236 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 KCNJ12Q14500 433 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 ARHGAP44Q17R89 818 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 TCP11X2Q5H9J9 407 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 DPY19L2P1Q6NXN4 242 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 HTR3DQ70Z44 454 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 SYNPOQ8N3V7 929 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 SPEM1Q8N4L4 309 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 CD101Q93033 1021 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 LRRC4Q9HBW1 653 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 PRMT8Q9NR22 394 aaPredicted RBP15.79■□□□□ 0.12
VPS39-210ENST00000568357 APEX2Q9UBZ4 518 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 AJAP1Q9UKB5 411 aaPredicted RBP15.79■□□□□ 0.12
VPS39-210ENST00000568357 NFE2L3Q9Y4A8 694 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 CACNA1GO43497 2377 aa15.79■□□□□ 0.12
VPS39-210ENST00000568357 PATJQ8NI35 1801 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 M0QYV0 167 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 PIK3R2O00459 728 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 TDGF1P13385 188 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 LCP1P13796 627 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 HOXC13P31276 330 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 CXCL12P48061 93 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 SLC6A11P48066 632 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 RGS7P49802 495 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 ATXN1P54253 815 aaKnown RBP15.78■□□□□ 0.12
VPS39-210ENST00000568357 YWHAGP61981 247 aaKnown RBP eCLIP15.78■□□□□ 0.12
VPS39-210ENST00000568357 ADIGQ0VDE8 80 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 STILQ15468 1287 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 ZNF528Q3MIS6 628 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 PKN3Q6P5Z2 889 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 ZC3H14Q6PJT7 736 aaKnown RBP15.78■□□□□ 0.12
VPS39-210ENST00000568357 SASS6Q6UVJ0 657 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 C11orf57Q6ZUT1 292 aaPredicted RBP15.78■□□□□ 0.12
VPS39-210ENST00000568357 ENOSF1Q7L5Y1 443 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 ARHGAP18Q8N392 663 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 SUMF1Q8NBK3 374 aa15.78■□□□□ 0.12
VPS39-210ENST00000568357 NELL1Q92832 810 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms