RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 UBE4BO95155 1302 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 A0A1W2PPM1 405 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 ASB14A6NK59 587 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 DNALI1O14645 258 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 ENO1P06733 434 aaKnown RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 GAP43P17677 238 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 SLC5A2P31639 672 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 HSPA13P48723 471 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 MYL7Q01449 175 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 KLF1Q13351 362 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 TRIP13Q15645 432 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 UGCGQ16739 394 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 KLHL38Q2WGJ6 581 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 MYLK3Q32MK0 819 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 OGFRL1Q5TC84 451 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 RFX8Q6ZV50 586 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 TTC7BQ86TV6 843 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 TREML1Q86YW5 311 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 METTL25Q8N6Q8 603 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 PRR11Q96HE9 360 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 PWWP2AQ96N64 755 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 DHRS4Q9BTZ2 278 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 SLC9A2Q9UBY0 812 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 EFR3BQ9Y2G0 817 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 MGAMO43451 1857 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 A0A088AWK7 358 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 SLC15A5A6NIM6 579 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 ZBTB39O15060 712 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 P4HA2O15460 535 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 ADCY3O60266 1144 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 ARIH2O95376 493 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 P4HBP07237 508 aaKnown RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 CDH2P19022 906 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 ADSSP30520 456 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 SFNP31947 248 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 NCKAP1LP55160 1127 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 NUP107P57740 925 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 CETN1Q12798 172 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 TMEM53Q6P2H8 277 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 DPP9Q86TI2 863 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 HSPBAP1Q96EW2 488 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 C7orf26Q96N11 449 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 SENP7Q9BQF6 1050 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 VPS37BQ9H9H4 285 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 C6orf203Q9P0P8 240 aaPredicted RBP11.3□□□□□ -0.6
USP3-206ENST00000558157 PPME1Q9Y570 386 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 MAD1L1Q9Y6D9 718 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 DOCK3Q8IZD9 2030 aa11.3□□□□□ -0.6
USP3-206ENST00000558157 H3BNX3 289 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 TXNDC9O14530 226 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 MAGEB3O15480 346 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 CA12O43570 354 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 TSHRP16473 764 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 AOC1P19801 751 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 PEX2P28328 305 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 HALP42357 657 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 ACTR2P61160 394 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 CACNB1Q02641 598 aaPredicted RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 RELAQ04206 551 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 BTKQ06187 659 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 LY6KQ17RY6 165 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 MORN1Q5T089 497 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 FBXL19Q6PCT2 694 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 NPLOC4Q8TAT6 608 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 SLC20A1Q8WUM9 679 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 PRPF31Q8WWY3 499 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 ATG4AQ8WYN0 398 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 REEP2Q9BRK0 252 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 HAUS8Q9BT25 410 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 RSL24D1Q9UHA3 163 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 ADAMTS6Q9UKP5 1117 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 STRIP2Q9ULQ0 834 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 EXOC7Q9UPT5 735 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 SHOC2Q9UQ13 582 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 FRMD4BQ9Y2L6 1034 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 SQORQ9Y6N5 450 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 BOLA2-SMG1P6H3BVE0 249 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 TGFB1I1O43294 461 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 SERPINA6P08185 405 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 ZNF12P17014 697 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 ETV4P43268 484 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 QARSP47897 775 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 CDK9P50750 372 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 PDAP1Q13442 181 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 TRIP10Q15642 601 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 CLPPQ16740 277 aaPredicted RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 ARHGAP44Q17R89 818 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 RWDD4Q6NW29 188 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 DRICH1Q6PGQ1 229 aaPredicted RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 ZNF467Q7Z7K2 595 aaPredicted RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 RDM1Q8NG50 284 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 DEPTORQ8TB45 409 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 MZB1Q8WU39 189 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 COX4I2Q96KJ9 171 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 CCT7Q99832 543 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 RUSC1Q9BVN2 902 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 CCDC106Q9BWC9 280 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 MRPL1Q9BYD6 325 aaKnown RBP11.29□□□□□ -0.6
USP3-206ENST00000558157 PDGFCQ9NRA1 345 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 ARMCX1Q9P291 453 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms