RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 EXOC1Q9NV70 894 aa11.2□□□□□ -0.62
SHMT2-215ENST00000554656 EHD2Q9NZN4 543 aa11.2□□□□□ -0.62
SHMT2-215ENST00000554656 HCN2Q9UL51 889 aa11.2□□□□□ -0.62
SHMT2-215ENST00000554656 E2F8A0AVK6 867 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 LNP1A1A4G5 178 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 FAM92AA1XBS5 289 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 PATE3B3GLJ2 98 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 GREM1O60565 184 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 PHACTR2O75167 634 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 RTN3O95197 1032 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 KAT7O95251 611 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 ADH5P11766 374 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 GBP1P32455 592 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 TIE1P35590 1138 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 EIF2DP41214 584 aaKnown RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 MRPS21P82921 87 aaKnown RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 NCAPHQ15003 741 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 ZACNQ401N2 412 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 KMT5BQ4FZB7 885 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 ZNF667Q5HYK9 610 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 SNX30Q5VWJ9 437 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 SPOPLQ6IQ16 392 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 GPRIN1Q7Z2K8 1008 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 SLC9A9Q8IVB4 645 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 BBS7Q8IWZ6 715 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 FRMD1Q8N878 549 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 TXNDC5Q8NBS9 432 aaKnown RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 TMEM174Q8WUU8 243 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 OVCA2Q8WZ82 227 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 SMARCD1Q96GM5 515 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 PNKPQ96T60 521 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 MED10Q9BTT4 135 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 EDEM2Q9BV94 578 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 LSM14BQ9BX40 385 aaKnown RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 DMAP1Q9NPF5 467 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 CHORDC1Q9UHD1 332 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-215ENST00000554656 CFAP47Q6ZTR5 3102 aa11.19□□□□□ -0.62
SHMT2-215ENST00000554656 ATP8B3O60423 1300 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 PCDH15Q96QU1 1955 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 A0A0A0MRY4 1105 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 PPP1R3GB7ZBB8 358 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 SLC9A3R1O14745 358 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 GIPC1O14908 333 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 TRIM24O15164 1050 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 HOXC11O43248 304 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 AP1G2O75843 785 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 RHOBTB1O94844 696 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 ADH1CP00326 375 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 NR3C1P04150 777 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 APODP05090 189 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 ASPAP45381 313 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 TUBP50607 506 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 NDST1P52848 882 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 HECTD3Q5T447 861 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 RNF43Q68DV7 783 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 ISM2Q6H9L7 571 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 DDX42Q86XP3 938 aaKnown RBP eCLIP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 C12orf29Q8N999 325 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 PDZD8Q8NEN9 1154 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 GOLGA5Q8TBA6 731 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 SLC2A14Q8TDB8 520 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 RLN3Q8WXF3 142 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 DDX1Q92499 740 aaKnown RBP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 DHTKD1Q96HY7 919 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 TWNKQ96RR1 684 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 CSNK1G1Q9HCP0 422 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.18□□□□□ -0.621e-9■■■■■ 76.9
SHMT2-215ENST00000554656 ARHGEF4Q9NR80 690 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 FAM49BQ9NUQ9 324 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 OSER1Q9NX31 292 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 MBD1Q9UIS9 605 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-215ENST00000554656 RWDD2AQ9UIY3 292 aa11.18□□□□□ -0.62
SHMT2-215ENST00000554656 CHD6Q8TD26 2715 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CACNA1EQ15878 2313 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 C4orf47A7E2U8 309 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 HHLA1C9JL84 531 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CDX4O14627 284 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-215ENST00000554656 TULP3O75386 442 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 KIF20AO95235 890 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 KCNK5O95279 499 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 ADCY5O95622 1261 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 TBX18O95935 607 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 ASS1P00966 412 aaKnown RBP11.17□□□□□ -0.62
SHMT2-215ENST00000554656 HLA-DRAP01903 254 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 IRF1P10914 325 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CDC25BP30305 580 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 P2RY2P41231 377 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 GRIA2P42262 883 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 AP3M2P53677 418 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 USP39Q53GS9 565 aaKnown RBP11.17□□□□□ -0.62
SHMT2-215ENST00000554656 HS1BP3Q53T59 392 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 PSAPL1Q6NUJ1 521 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 SV2AQ7L0J3 742 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CYP2U1Q7Z449 544 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 TTC30AQ86WT1 665 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 TMEM25Q86YD3 366 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 MIB1Q86YT6 1006 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CRYBG2Q8N1P7 616 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 NAT16Q8N8M0 369 aa11.17□□□□□ -0.62
SHMT2-215ENST00000554656 CCDC26Q8TAB7 109 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms