RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NRG4Q8WWG1 115 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ALKBH8Q96BT7 664 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RNF157Q96PX1 679 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SRPK1Q96SB4 655 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 BTBD10Q9BSF8 475 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PHACTR1Q9C0D0 580 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SPATC1LQ9H0A9 340 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RNPEPQ9H4A4 650 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SAR1AQ9NR31 198 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ARHGEF4Q9NR80 690 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PDGFCQ9NRA1 345 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ASNSD1Q9NWL6 643 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TAS2R1Q9NYW7 299 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 WDR35Q9P2L0 1181 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SLC17A6Q9P2U8 582 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TSPAN16Q9UKR8 245 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 A0A087WZ62 844 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 COPEO14579 308 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 NDC80O14777 642 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PRPSAP2O60256 369 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 METTL18O95568 372 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PFKMP08237 780 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 YY1P25490 414 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 GABRB2P47870 512 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 IRX4P78413 519 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 BST1Q10588 318 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 BLMHQ13867 455 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 KRT81Q14533 505 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SLC10A6Q3KNW5 377 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 CCDC14Q49A88 953 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 GADL1Q6ZQY3 521 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ZCCHC23Q6ZST2 131 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 TREML1Q86YW5 311 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 RIOX2Q8IUF8 465 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SCUBE3Q8IX30 993 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 UNC5BQ8IZJ1 945 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ENDOVQ8N8Q3 282 aaKnown RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PCDH19Q8TAB3 1148 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF398Q8TD17 642 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 NSL1Q96IY1 281 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SPATA33Q96N06 139 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ACAP3Q96P50 834 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FDXACB1Q9BRP7 624 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 B3GNT5Q9BYG0 378 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FRMD8P1Q9BZ68 369 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 TRIM6Q9C030 488 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 IFT122Q9HBG6 1241 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 POPDC2Q9HBU9 364 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PIH1D1Q9NWS0 290 aaKnown RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ZC3H7BQ9UGR2 993 aaKnown RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 LRRC42Q9Y546 428 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PLXNA1Q9UIW2 1896 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 HMX2A2RU54 273 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FCHO1O14526 889 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 GYG2O15488 501 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 HCRTO43612 131 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 CCDC22O60826 627 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 USP2O75604 605 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 RFPL1O75677 317 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 VTNP04004 478 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 STIP1P31948 543 aaKnown RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 RCN1Q15293 331 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 WASHC2DQ5SRD0 308 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PMF1Q6P1K2 205 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ILDR2Q71H61 639 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SLC26A11Q86WA9 606 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 CHSY1Q86X52 802 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SHKBP1Q8TBC3 707 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FAM172AQ8WUF8 416 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 OXNAD1Q96HP4 312 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 HPDLQ96IR7 371 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FAM167AQ96KS9 214 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 CNPY3Q9BT09 278 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 OSBPL1AQ9BXW6 950 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 C2orf40Q9H1Z8 148 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 TXNRD2Q9NNW7 524 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 BATF3Q9NR55 127 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 FAM49BQ9NUQ9 324 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 PCMTD2Q9NV79 361 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 ETNK2Q9NVF9 386 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 TNFSF13BQ9Y275 285 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 MFHAS1Q9Y4C4 1052 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 NME7Q9Y5B8 376 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SHROOM3Q8TF72 1996 aa7.79□□□□□ -1.16
LIMA1-213ENST00000552720 SLC15A5A6NIM6 579 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PPEF2O14830 753 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CHADO15335 359 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MAP3K13O43283 966 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 KIF1CO43896 1103 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 LGR5O75473 907 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 GABBR2O75899 941 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ZBED1O96006 694 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PCK1P35558 622 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 GMPRP36959 345 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 BCAR1P56945 870 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 GBE1Q04446 702 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SLC10A2Q12908 348 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 Q3C1V9 767 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms