RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SMTNL2Q2TAL5 461 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 TNFAIP8L3Q5GJ75 292 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 ARCQ7LC44 396 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 FAM35AQ86V20 835 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 SNF8Q96H20 258 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 CFAP57Q96MR6 1250 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 TMEM109Q9BVC6 243 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 CNOT10Q9H9A5 744 aaKnown RBP14.95□□□□□ -0.02
VPS33A-209ENST00000544349 KRT82Q9NSB4 513 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 NEU2Q9Y3R4 380 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 PCDHB7Q9Y5E2 793 aa14.95□□□□□ -0.02
VPS33A-209ENST00000544349 TANC1Q9C0D5 1861 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 hCG_1818297A0A087WSY0 165 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 ARHGEF37A1IGU5 675 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 LRRD1A4D1F6 860 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 C3orf70A6NLC5 250 aaPredicted RBP14.94□□□□□ -0.02
VPS33A-209ENST00000544349 FOXO6A8MYZ6 492 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 KIAA0754O94854 1291 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 KRT10P13645 584 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 TYMPP19971 482 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 SDC4P31431 198 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 CDKN2BP42772 138 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 CDR1P51861 262 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 MAP3K7CLP57077 242 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 RNASELQ05823 741 aaKnown RBP14.94□□□□□ -0.02
VPS33A-209ENST00000544349 TFDP3Q5H9I0 405 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 KCNT1Q5JUK3 1230 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 FAM171BQ6P995 826 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 SCLYQ96I15 445 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 TOX2Q96NM4 488 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 HIPK3Q9H422 1215 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 CTNNAL1Q9UBT7 734 aa14.94□□□□□ -0.02
VPS33A-209ENST00000544349 TMEM189-UBE2V1I3L0A0 370 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 AGTP01019 485 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 KDELR1P24390 212 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 ATP11AP98196 1134 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 ADIGQ0VDE8 80 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CDO1Q16878 200 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 RAB6CQ53S08 254 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 INTS6LQ5JSJ4 861 aaKnown RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 EFHC1Q5JVL4 640 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 KAZNQ674X7 775 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 OVOS1Q6IE37 1185 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 SPATS2Q86XZ4 545 aaKnown RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CMASQ8NFW8 434 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 FAM193BQ96PV7 902 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 PEBP4Q96S96 227 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 SMOQ99835 787 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 RAB6CQ9H0N0 254 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 LRRC4Q9HBW1 653 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 HOMER3Q9NSC5 361 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 PCDHB8Q9UN66 801 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 RASGRF2O14827 1237 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 AP1G2O75843 785 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 TJP3O95049 919 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CXCL10P02778 98 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 ATF2P15336 505 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 OR1G1P47890 313 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CCL23P55773 120 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 TLE2Q04725 743 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 ADCY1Q08828 1119 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CCNG2Q16589 344 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 RNF187Q5TA31 235 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 FBXW10Q5XX13 1052 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 CYP4V2Q6ZWL3 525 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-209ENST00000544349 THEM5Q8N1Q8 247 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 OTUD6BQ8N6M0 293 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 SEC16BQ96JE7 1060 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 ZNF333Q96JL9 665 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 DNAJB4Q9UDY4 337 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 TTC3P53804 2025 aa14.93□□□□□ -0.02
VPS33A-209ENST00000544349 PARNO95453 639 aaKnown RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 PTPN9P43378 593 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TRIM60Q495X7 471 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 C6orf118Q5T5N4 469 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 C1orf53Q5VUE5 145 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 MICALCLQ6ZW33 695 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TRMT10CQ7L0Y3 403 aaKnown RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 YTHDF3Q7Z739 585 aaKnown RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 ABI1Q8IZP0 508 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 GLIS1Q8NBF1 620 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 ZMIZ2Q8NF64 920 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 OR10T2Q8NGX3 314 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 FAM172AQ8WUF8 416 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 HSPH1Q92598 858 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 MYLPFQ96A32 169 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 SMARCD1Q96GM5 515 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CASD1Q96PB1 797 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 ZNF317Q96PQ6 595 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 PKMYT1Q99640 499 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 NCAPGQ9BPX3 1015 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 C11orf84Q9BUA3 381 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 PPP1R12CQ9BZL4 782 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 NGRNQ9NPE2 291 aaKnown RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 EFR3BQ9Y2G0 817 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CAPN7Q9Y6W3 813 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 PRPSAP2O60256 369 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 GAS8O95995 478 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CREB1P16220 341 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms