RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 IFNLR1Q8IU57 520 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ABI1Q8IZP0 508 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 CMASQ8NFW8 434 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SOCS4Q8WXH5 440 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 MTG1Q9BT17 334 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 DDX43Q9NXZ2 648 aaKnown RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 PHTF1Q9UMS5 762 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-213ENST00000540338 LOXHD1Q8IVV2 1947 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TRIM49D1C9J1S8 452 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 GHRP10912 638 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 MX2P20592 715 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SERPINB9P50453 376 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TKTL1P51854 596 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 MAP3K7CLP57077 242 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 IRX4P78413 519 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 NOMO1Q15155 1222 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ITPRIPL1Q6GPH6 555 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TEKT4Q8WW24 435 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TSPAN18Q96SJ8 248 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ZNF670Q9BS34 389 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 HERPUD2Q9BSE4 406 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 B3GNT5Q9BYG0 378 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 VRTNQ9H8Y1 702 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 KBTBD13C9JR72 458 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 CHUKO15111 745 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 CHADO15335 359 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 BANF1O75531 89 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 FBXO21O94952 628 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 TAF5Q15542 800 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SLC26A11Q86WA9 606 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SCN4BQ8IWT1 228 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 PARP9Q8IXQ6 854 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SGIP1Q9BQI5 828 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ETNK1Q9HBU6 452 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SLC40A1Q9NP59 571 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 KRT82Q9NSB4 513 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 ZFP69BQ9UJL9 534 aa11.18□□□□□ -0.62
CLIP1-213ENST00000540338 SNX3O60493 162 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 B3GAT3O94766 335 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 FSBPO95073 299 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 AMPD1P23109 780 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 ARFIP2P53365 341 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 KCNT2Q6UVM3 1135 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 PIGZQ86VD9 579 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 NUDCD3Q8IVD9 361 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 CPT1BQ92523 772 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TBC1D31Q96DN5 1066 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 STAMBPL1Q96FJ0 436 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SYT15Q9BQS2 421 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SIK2Q9H0K1 926 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 PCDH18Q9HCL0 1135 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 DDIT4Q9NX09 232 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 LGALS13Q9UHV8 139 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TREHO43280 583 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 GSTA1P08263 222 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TSHRP16473 764 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 PTPN1P18031 435 aaKnown RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 GRB14Q14449 540 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TRABD2AQ86V40 505 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 CRLF3Q8IUI8 442 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 STK32AQ8WU08 396 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 STMN2Q93045 179 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 EMID1Q96A84 441 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TSSK1BQ9BXA7 367 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 NRDE2Q9H7Z3 1164 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TULP2O00295 520 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TCEA3O75764 348 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 YBX3P16989 372 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 THPOP40225 353 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SLC12A2P55011 1212 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SLC25A11Q02978 314 aaKnown RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 INCA1Q0VD86 236 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 OASLQ15646 514 aaKnown RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 BTBD8Q5XKL5 378 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 RHBDF2Q6PJF5 856 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 DENND5BQ6ZUT9 1274 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 B3GALNT2Q8NCR0 500 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 MAML1Q92585 1016 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 AGAP3Q96P47 875 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TSPYL2Q9H2G4 693 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 MANSC1Q9H8J5 431 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 ATXN2Q99700 1313 aaKnown RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 IQCF3P0C7M6 154 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SAT1P21673 171 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SREBF2Q12772 1141 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 FASTKD3Q14CZ7 662 aaKnown RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 WSCD1Q658N2 575 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 ANKS1BQ7Z6G8 1248 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 GLIS1Q8NBF1 620 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 SENP8Q96LD8 212 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 ACSS3Q9H6R3 686 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 NPHS2Q9NP85 383 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 ZFATQ9P243 1243 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TIMM13Q9Y5L4 95 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-213ENST00000540338 TRPV2Q9Y5S1 764 aa11.17□□□□□ -0.62
CLIP1-213ENST00000540338 STAU1O95793 577 aaKnown RBP11.16□□□□□ -0.62
CLIP1-213ENST00000540338 F9P00740 461 aa11.16□□□□□ -0.62
CLIP1-213ENST00000540338 RPLP2P05387 115 aaKnown RBP11.16□□□□□ -0.62
CLIP1-213ENST00000540338 ODC1P11926 461 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms