RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 C12orf60Q5U649 245 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 ANKRD20A3Q5VUR7 823 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TRIM68Q6AZZ1 485 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TRIM65Q6PJ69 517 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TMC5Q6UXY8 1006 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 KDM7AQ6ZMT4 941 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 SSH2Q76I76 1423 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 IFNL2Q8IZJ0 200 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 VPS52Q8N1B4 723 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 NUP93Q8N1F7 819 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 BBS5Q8N3I7 341 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TMCO5AQ8N6Q1 288 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 POU5F2Q8N7G0 328 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 PCSK9Q8NBP7 692 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 OR8H1Q8NGG4 311 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TTLL11Q8NHH1 800 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 FNDC8Q8TC99 324 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 COG1Q8WTW3 980 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 CHTF18Q8WVB6 975 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 ZNF274Q96GC6 653 aaPredicted RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 TOE1Q96GM8 510 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 REXO5Q96IC2 774 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 ZSWIM3Q96MP5 696 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 COQ7Q99807 217 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 CTRCQ99895 268 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 SIKE1Q9BRV8 207 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 BOCQ9BWV1 1114 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 SPATA16Q9BXB7 569 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 CARD11Q9BXL7 1154 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 NDEL1Q9GZM8 345 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 RNF38Q9H0F5 515 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 NDST4Q9H3R1 872 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 MOV10Q9HCE1 1003 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 PALMDQ9NP74 551 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 VTA1Q9NP79 307 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 CABP5Q9NP86 173 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 CNGB3Q9NQW8 809 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 C8orf4Q9NR00 106 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 POLE3Q9NRF9 147 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 USP40Q9NVE5 1235 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 GID8Q9NWU2 228 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 THG1LQ9NWX6 298 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 EHD2Q9NZN4 543 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 ZNF180Q9UJW8 692 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 MAPRE3Q9UPY8 281 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 TMEM5Q9Y2B1 443 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 LRCH1Q9Y2L9 728 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 ZDHHC9Q9Y397 364 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 HBS1LQ9Y450 684 aaKnown RBP5.78□□□□□ -1.48
CD44-236ENST00000533222 SLC4A4Q9Y6R1 1079 aa5.78□□□□□ -1.48
CD44-236ENST00000533222 ERCC6Q03468 1493 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 A0A1B0GVG6 124 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ARHGAP10A1A4S6 786 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 FRMD3A2A2Y4 597 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 RASA4BC9J798 803 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 F8W810 466 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 DNAJC6O75061 913 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 KLHL2O95198 593 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 DDX58O95786 925 aaKnown RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 F2P00734 622 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 CYP17A1P05093 508 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 PAEPP09466 180 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 MED14OSP0DP75 135 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 PDHBP11177 359 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 KRT10P13645 584 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ZNF12P17014 697 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 GLDCP23378 1020 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 TYK2P29597 1187 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 AXLP30530 894 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 MC4RP32245 332 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 HPDP32754 393 aaPredicted RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 LONP1P36776 959 aaKnown RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 GNALP38405 381 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ID4P47928 161 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 PDE6CP51160 858 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 AP3M2P53677 418 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ATP6V0D1P61421 351 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ROR1Q01973 937 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 TBL3Q12788 808 aaKnown RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 STRN3Q13033 797 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ITGB3BPQ13352 177 aaPredicted RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 CUL1Q13616 776 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 TMEM132BQ14DG7 1078 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 RGS21Q2M5E4 152 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 KLHL38Q2WGJ6 581 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 INO80DQ53TQ3 878 aaPredicted RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 HERC4Q5GLZ8 1057 aaPredicted RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 NAA35Q5VZE5 725 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 SNRNP48Q6IEG0 339 aaKnown RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 ANO7Q6IWH7 933 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 METTL2BQ6P1Q9 378 aaKnown RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 BTNL9Q6UXG8 535 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 KSR2Q6VAB6 950 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 ZNF704Q6ZNC4 412 aaPredicted RBP5.77□□□□□ -1.49
CD44-236ENST00000533222 IDO2Q6ZQW0 420 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 BNIPLQ7Z465 357 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 B3GNT8Q7Z7M8 397 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 RASSF3Q86WH2 238 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 MAP7D3Q8IWC1 876 aa5.77□□□□□ -1.49
CD44-236ENST00000533222 TRIM48Q8IWZ4 208 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms