RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 MRPL58Q14197 206 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 NOMO1Q15155 1222 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 SMTNL2Q2TAL5 461 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 KCNT1Q5JUK3 1230 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 SH3PXD2AQ5TCZ1 1133 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 KAZNQ674X7 775 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 HIBCHQ6NVY1 386 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 C4orf50Q6ZRC1 276 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 PCGF5Q86SE9 256 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 DEFB106AQ8N104 65 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 SIX6OS1Q8N1H7 587 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 RNF169Q8NCN4 708 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 DBF4BQ8NFT6 615 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ACTL9Q8TC94 416 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 SH3TC2Q8TF17 1288 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CLEC4CQ8WTT0 213 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 MYLPFQ96A32 169 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 NTAN1Q96AB6 310 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 CCDC114Q96M63 670 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 RUFY1Q96T51 708 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 TMEM175Q9BSA9 504 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 SNRNP25Q9BV90 132 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 MAK16Q9BXY0 300 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 OXCT2Q9BYC2 517 aaPredicted RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 TRIM31Q9BZY9 425 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 POPDC2Q9HBU9 364 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 NGRNQ9NPE2 291 aaKnown RBP8.73□□□□□ -1.01
RNF4-220ENST00000513578 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.73□□□□□ -1.01
RNF4-220ENST00000513578 CACNG4Q9UBN1 327 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ASIC3Q9UHC3 531 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 ZNF148Q9UQR1 794 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 INPP5FQ9Y2H2 1132 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 USP3Q9Y6I4 520 aa8.73□□□□□ -1.01
RNF4-220ENST00000513578 MYO16Q9Y6X6 1858 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 CACNA1AO00555 2505 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 RNF40O75150 1001 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 GRAP2O75791 330 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 F9P00740 461 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 FYNP06241 537 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 L1CAMP32004 1257 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 RDXP35241 583 aaKnown RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 ADCY8P40145 1251 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 NR2C2P49116 596 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 MNX1P50219 401 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 MAP3K7CLP57077 242 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ATP11AP98196 1134 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 YWHAHQ04917 246 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 SCAPQ12770 1279 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 XRCC4Q13426 336 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 KRT81Q14533 505 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 MORF4L2Q15014 288 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 LLGL1Q15334 1064 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 TERF2Q15554 542 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 CDO1Q16878 200 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 CCDC142Q17RM4 750 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ANKRD20A8PQ5CZ79 823 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 AGBL2Q5U5Z8 902 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 OTUD1Q5VV17 481 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 C4orf22Q6V702 233 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 SLC39A5Q6ZMH5 540 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ZNF280BQ86YH2 543 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 RFX6Q8HWS3 928 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 DCP1BQ8IZD4 617 aaKnown RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 PQLC3Q8N755 202 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 HSPH1Q92598 858 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 EXOC4Q96A65 974 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ACSF2Q96CM8 615 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 RTP4Q96DX8 246 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 FUBP3Q96I24 572 aaKnown RBP eCLIP8.72□□□□□ -1.01
RNF4-220ENST00000513578 CASD1Q96PB1 797 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 DEFB118Q96PH6 123 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 FAM193BQ96PV7 902 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 BEGAINQ9BUH8 593 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 COLEC11Q9BWP8 271 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 MRPL9Q9BYD2 267 aaKnown RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 ULBP1Q9BZM6 244 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 MCOLN1Q9GZU1 580 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ZCWPW1Q9H0M4 648 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 EPB41L4BQ9H329 900 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 TMBIM4Q9HC24 238 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 DMAP1Q9NPF5 467 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 AAASQ9NRG9 546 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 MTMR10Q9NXD2 777 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 ANAPC5Q9UJX4 755 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 TPX2Q9ULW0 747 aaKnown RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 FZD10Q9ULW2 581 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 PLAAQ9Y263 795 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 FAN1Q9Y2M0 1017 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 PCDHB7Q9Y5E2 793 aa8.72□□□□□ -1.01
RNF4-220ENST00000513578 TIMM13Q9Y5L4 95 aaPredicted RBP8.72□□□□□ -1.01
RNF4-220ENST00000513578 SF3B1O75533 1304 aaKnown RBP eCLIP8.72□□□□□ -1.012e-6■■■■■ 112
RNF4-220ENST00000513578 BCLAF3A2AJT9 711 aaKnown RBP8.71□□□□□ -1.02
RNF4-220ENST00000513578 OR6C75A6NL08 312 aa8.71□□□□□ -1.02
RNF4-220ENST00000513578 A6NNZ2 444 aa8.71□□□□□ -1.02
RNF4-220ENST00000513578 HMGB1P1B2RPK0 211 aaPredicted RBP8.71□□□□□ -1.02
RNF4-220ENST00000513578 HAX1O00165 279 aa8.71□□□□□ -1.02
RNF4-220ENST00000513578 APOL1O14791 398 aa8.71□□□□□ -1.02
RNF4-220ENST00000513578 MCF2LO15068 1137 aa8.71□□□□□ -1.02
RNF4-220ENST00000513578 B4GALT3O60512 393 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms