RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 ZZEF1O43149 2961 aa9.32□□□□□ -0.92
USP4-213ENST00000488520 TTC26A0AVF1 554 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 MTMR11A4FU01 709 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 M0QZQ0 153 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 IKBKBO14920 756 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 FOXD2O60548 495 aaPredicted RBP9.31□□□□□ -0.92
USP4-213ENST00000488520 OAZ2O95190 189 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 EPN2O95208 641 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 PRAMEF12O95522 483 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 KRT19P08727 400 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 CYP3A5P20815 502 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 LIMK1P53667 647 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 MYL5Q02045 173 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 CYP24A1Q07973 514 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 PSMD6Q15008 389 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 ARHGAP15Q53QZ3 475 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 OVOS1Q6IE37 1185 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 JADE1Q6IE81 842 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 TCEAL6Q6IPX3 200 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 PSAPL1Q6NUJ1 521 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 TTI2Q6NXR4 508 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 CRELD2Q6UXH1 353 aaPredicted RBP9.31□□□□□ -0.92
USP4-213ENST00000488520 CACNA2D4Q7Z3S7 1137 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 BRSK2Q8IWQ3 736 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 TPCN2Q8NHX9 752 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 BPIFB1Q8TDL5 484 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 GAB3Q8WWW8 586 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 TCEAL3Q969E4 200 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 EEF2KMTQ96G04 330 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 LPIN3Q9BQK8 851 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 THAP9Q9H5L6 903 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 RUBCNLQ9H714 662 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 PDE11AQ9HCR9 933 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 GKN1Q9NS71 199 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 DNAAF2Q9NVR5 837 aaKnown RBP9.31□□□□□ -0.92
USP4-213ENST00000488520 DPP3Q9NY33 737 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 SLC8A2Q9UPR5 921 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 C2CD2Q9Y426 696 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP4-213ENST00000488520 IGF2RP11717 2491 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 ADAMTS20P59510 1910 aa9.31□□□□□ -0.92
USP4-213ENST00000488520 ATRXP46100 2492 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 PPEF2O14830 753 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 AKAP3O75969 853 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 KCNK5O95279 499 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 THBS1P07996 1170 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 PAX3P23760 479 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 RAP1GAPP47736 663 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 CASP4P49662 377 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 PMS1P54277 932 aaKnown RBP9.3□□□□□ -0.92
USP4-213ENST00000488520 CLDN10P78369 228 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 RBP5P82980 135 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 ENPEPQ07075 957 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 BFSP1Q12934 665 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 MYO1EQ12965 1108 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 GPR17Q13304 367 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 BIRC3Q13489 604 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 ITPRIPL2Q3MIP1 535 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 FILIP1LQ4L180 1135 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 ZCWPW2Q504Y3 356 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 DCAF17Q5H9S7 520 aaPredicted RBP9.3□□□□□ -0.92
USP4-213ENST00000488520 EFHC2Q5JST6 749 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 RNF43Q68DV7 783 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 TRIM68Q6AZZ1 485 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 FSTL4Q6MZW2 842 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 WDR49Q8IV35 697 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 ZNF295-AS1Q8N0V1 137 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 SYNPOQ8N3V7 929 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 ZSWIM2Q8NEG5 633 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 C1orf216Q8TAB5 229 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 PARD3BQ8TEW8 1205 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 GIPC2Q8TF65 315 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 PSMG2Q969U7 264 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 HHIPQ96QV1 700 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 SEPT5Q99719 369 aaPredicted RBP9.3□□□□□ -0.92
USP4-213ENST00000488520 DUSP9Q99956 384 aaKnown RBP9.3□□□□□ -0.92
USP4-213ENST00000488520 BPIFA3Q9BQP9 254 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 EBF3Q9H4W6 596 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 MMRN2Q9H8L6 949 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 NFE2L3Q9Y4A8 694 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 USP3Q9Y6I4 520 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 SPEGQ15772 3267 aa9.3□□□□□ -0.92
USP4-213ENST00000488520 OR6C75A6NL08 312 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 C1QTNF9BB2RNN3 333 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 GIPC1O14908 333 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 DCLK1O15075 740 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 EGFP01133 1207 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 ADRB2P07550 413 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 C1QTNF9P0C862 333 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 SPINK2P20155 84 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 LRPAP1P30533 357 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 HOXA6P31267 233 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 GTF2H1P32780 548 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 MPLP40238 635 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 PNPLA4P41247 253 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 SHC2P98077 582 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 CREB5Q02930 508 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 TAF12Q16514 161 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 MGAT5BQ3V5L5 792 aa9.29□□□□□ -0.92
USP4-213ENST00000488520 SLC39A12Q504Y0 691 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms