RNA–Protein interactions for RNA: ENST00000461326.1

CLK1-206, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 435 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-206ENST00000461326 COL15A1P39059 1388 aa4.4□□□□□ -1.7
CLK1-206ENST00000461326 HMGB1P1B2RPK0 211 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 PROM1O43490 865 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 SH3BP5O60239 455 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 NXPH3O95157 252 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ZFPL1O95159 310 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ARP10275 920 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 CST5P28325 142 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 MCM2P49736 904 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 GATMP50440 423 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 SEC24CP53992 1094 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 GUCY1B3Q02153 619 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 RESTQ13127 1097 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 POSTNQ15063 836 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ST3GAL2Q16842 350 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ADCK5Q3MIX3 580 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ATPAF1Q5TC12 328 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 VPS53Q5VIR6 699 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 LIN54Q6MZP7 749 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 USP49Q70CQ1 688 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 RAB11FIP2Q7L804 512 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 DTX2Q86UW9 622 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ABRAQ8N0Z2 381 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 LNX2Q8N448 690 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.4□□□□□ -1.71
CLK1-206ENST00000461326 SIMC1Q8NDZ2 872 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 SPPL3Q8TCT6 385 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 OTUD7AQ8TE49 926 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 ATRIPQ8WXE1 791 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 THAP4Q8WY91 577 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 LINC00476Q8WZB0 136 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 NACC2Q96BF6 587 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ZSCAN31Q96LW9 406 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 HIST1H2AAQ96QV6 131 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 WDR24Q96S15 920 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 SORBS1Q9BX66 1292 aaKnown RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 TEX101Q9BY14 249 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 ACTRT3Q9BYD9 372 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 GBA2Q9HCG7 927 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.4□□□□□ -1.71
CLK1-206ENST00000461326 SERTAD3Q9UJW9 196 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 GJD2Q9UKL4 321 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 USP22Q9UPT9 525 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 SSX2IPQ9Y2D8 614 aa4.4□□□□□ -1.71
CLK1-206ENST00000461326 LRRFIP2Q9Y608 721 aaKnown RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 EPN1Q9Y6I3 576 aaPredicted RBP4.4□□□□□ -1.71
CLK1-206ENST00000461326 PCDH17O14917 1159 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 SLC16A3O15427 465 aaKnown RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 ACTL6BO94805 426 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 NDUFA10O95299 355 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 TNFRSF6BO95407 300 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 ONECUT2O95948 504 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 UQCRC1P31930 480 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 CDK7P50613 346 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 PAPOLAP51003 745 aaKnown RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 AP2B1P63010 937 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 FAM189BP81408 668 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 CSHL1Q14406 222 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 NBPF8Q3BBV2 869 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 TRIM60Q495X7 471 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 FBXO47Q5MNV8 452 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 ZNF618Q5T7W0 954 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 CYP26C1Q6V0L0 522 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 SLC44A2Q8IWA5 706 aaPredicted RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 CCDC117Q8IWD4 279 aaPredicted RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 IZUMO1Q8IYV9 350 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 CAGE1Q8TC20 777 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 ATG4AQ8WYN0 398 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 SLC9A6Q92581 669 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 USP13Q92995 863 aaPredicted RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 SDCCAG3Q96C92 435 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 EVI5LQ96CN4 794 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 PGBD1Q96JS3 809 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 ADAM2Q99965 735 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 DDX23Q9BUQ8 820 aaKnown RBP4.39□□□□□ -1.71
CLK1-206ENST00000461326 AMBRA1Q9C0C7 1298 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 GLOD4Q9HC38 313 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 PRDM8Q9NQV8 689 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 KIF17Q9P2E2 1029 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 RNF7Q9UBF6 113 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 DKK2Q9UBU2 259 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 STEAP1Q9UHE8 339 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 LZTS1Q9Y250 596 aa4.39□□□□□ -1.71
CLK1-206ENST00000461326 COL11A2P13942 1736 aaPredicted RBP4.38□□□□□ -1.71
CLK1-206ENST00000461326 A8MVJ9 347 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 EFCAB8A8MWE9 144 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 PSMD9O00233 223 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 IPO5O00410 1097 aaKnown RBP4.38□□□□□ -1.71
CLK1-206ENST00000461326 FCHO1O14526 889 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 IKBKBO14920 756 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 NCAM2O15394 837 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 ZSCAN9O15535 394 aaPredicted RBP4.38□□□□□ -1.71
CLK1-206ENST00000461326 FAM155BO75949 473 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 ANXA6P08133 673 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 SRGAP2BP0DMP2 458 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 PPP3CBP16298 524 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 GATA3P23771 443 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 TIRAPP58753 221 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 TAF12Q16514 161 aa4.38□□□□□ -1.71
CLK1-206ENST00000461326 PTCHD3Q3KNS1 767 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms