RNA–Protein interactions for RNA: ENST00000461326.1

CLK1-206, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 435 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-206ENST00000461326 AEBP2Q6ZN18 517 aaPredicted RBP24.52■■□□□ 1.52
CLK1-206ENST00000461326 CHIC1Q5VXU3 224 aa23.14■■□□□ 1.29
CLK1-206ENST00000461326 SENP3Q9H4L4 574 aaPredicted RBP21.07■□□□□ 0.96
CLK1-206ENST00000461326 PHF23Q9BUL5 403 aaPredicted RBP20.71■□□□□ 0.91
CLK1-206ENST00000461326 FOXD1Q16676 465 aa19.59■□□□□ 0.73
CLK1-206ENST00000461326 MSH5O43196 834 aa18.52■□□□□ 0.56
CLK1-206ENST00000461326 PLPPR3Q6T4P5 718 aa18.43■□□□□ 0.54
CLK1-206ENST00000461326 POTEDQ86YR6 584 aa18.38■□□□□ 0.53
CLK1-206ENST00000461326 PIAS4Q8N2W9 510 aaPredicted RBP18.31■□□□□ 0.52
CLK1-206ENST00000461326 PPP6R1Q9UPN7 881 aa18.1■□□□□ 0.49
CLK1-206ENST00000461326 ADRA2BP18089 450 aa18.06■□□□□ 0.48
CLK1-206ENST00000461326 DMRT2Q9Y5R5 561 aa16.65■□□□□ 0.26
CLK1-206ENST00000461326 SCAF1Q9H7N4 1312 aaKnown RBP16.65■□□□□ 0.26
CLK1-206ENST00000461326 MAPK8IP2Q13387 824 aaPredicted RBP16.63■□□□□ 0.25
CLK1-206ENST00000461326 PPP4R3CPQ6ZMV5 832 aa16.1■□□□□ 0.17
CLK1-206ENST00000461326 DCAF8L1A6NGE4 600 aa16.01■□□□□ 0.15
CLK1-206ENST00000461326 CACNB1Q02641 598 aaPredicted RBP16■□□□□ 0.15
CLK1-206ENST00000461326 HOXD11P31277 338 aaPredicted RBP15.93■□□□□ 0.14
CLK1-206ENST00000461326 CNKSR2Q8WXI2 1034 aa15.87■□□□□ 0.13
CLK1-206ENST00000461326 RNF216Q9NWF9 866 aaPredicted RBP15.78■□□□□ 0.12
CLK1-206ENST00000461326 RNF39Q9H2S5 420 aa15.72■□□□□ 0.11
CLK1-206ENST00000461326 C1QBPQ07021 282 aaKnown RBP15.52■□□□□ 0.08
CLK1-206ENST00000461326 NCBP3Q53F19 620 aaKnown RBP15.48■□□□□ 0.07
CLK1-206ENST00000461326 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CLK1-206ENST00000461326 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.23■□□□□ 0.032e-9■■□□□ 13
CLK1-206ENST00000461326 NPM3O75607 178 aaKnown RBP15.17■□□□□ 0.02
CLK1-206ENST00000461326 U3KPZ7 1027 aaPredicted RBP14.83□□□□□ -0.04
CLK1-206ENST00000461326 CAPN15O75808 1086 aa14.72□□□□□ -0.05
CLK1-206ENST00000461326 KCNA4P22459 653 aa14.66□□□□□ -0.06
CLK1-206ENST00000461326 SPINK5Q9NQ38 1064 aaPredicted RBP14.66□□□□□ -0.06
CLK1-206ENST00000461326 DSG3P32926 999 aa14.64□□□□□ -0.07
CLK1-206ENST00000461326 APLP2Q06481 763 aa14.53□□□□□ -0.08
CLK1-206ENST00000461326 SLC4A2P04920 1241 aa14.51□□□□□ -0.09
CLK1-206ENST00000461326 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
CLK1-206ENST00000461326 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
CLK1-206ENST00000461326 TRHP20396 242 aaPredicted RBP14.42□□□□□ -0.1
CLK1-206ENST00000461326 ZNF219Q9P2Y4 722 aaPredicted RBP14.42□□□□□ -0.1
CLK1-206ENST00000461326 POTEHQ6S545 545 aa14.38□□□□□ -0.11
CLK1-206ENST00000461326 ABCB7O75027 752 aa14.32□□□□□ -0.12
CLK1-206ENST00000461326 SAMD1Q6SPF0 538 aaPredicted RBP14.32□□□□□ -0.12
CLK1-206ENST00000461326 MYCNP04198 464 aaPredicted RBP14.1□□□□□ -0.15
CLK1-206ENST00000461326 RBM42Q9BTD8 480 aaKnown RBP14.07□□□□□ -0.16
CLK1-206ENST00000461326 POLA2Q14181 598 aa13.96□□□□□ -0.17
CLK1-206ENST00000461326 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
CLK1-206ENST00000461326 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
CLK1-206ENST00000461326 CHRDL2Q6WN34 429 aa13.79□□□□□ -0.2
CLK1-206ENST00000461326 ZBTB12Q9Y330 459 aaPredicted RBP13.75□□□□□ -0.21
CLK1-206ENST00000461326 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
CLK1-206ENST00000461326 AKT1S1Q96B36 256 aa13.66□□□□□ -0.22
CLK1-206ENST00000461326 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
CLK1-206ENST00000461326 REM2Q8IYK8 340 aaPredicted RBP13.49□□□□□ -0.25
CLK1-206ENST00000461326 ZBTB22O15209 634 aa13.43□□□□□ -0.26
CLK1-206ENST00000461326 ATXN8OSP0DMR3 200 aa13.42□□□□□ -0.26
CLK1-206ENST00000461326 PIP4P2Q8N4L2 257 aa13.39□□□□□ -0.27
CLK1-206ENST00000461326 SP7Q8TDD2 431 aaPredicted RBP13.39□□□□□ -0.27
CLK1-206ENST00000461326 PITPNM1O00562 1244 aa13.35□□□□□ -0.27
CLK1-206ENST00000461326 FBLN2P98095 1184 aa13.3□□□□□ -0.28
CLK1-206ENST00000461326 FXR2P51116 673 aaKnown RBP eCLIP13.28□□□□□ -0.28
CLK1-206ENST00000461326 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
CLK1-206ENST00000461326 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
CLK1-206ENST00000461326 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
CLK1-206ENST00000461326 HAX1O00165 279 aa13.24□□□□□ -0.29
CLK1-206ENST00000461326 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
CLK1-206ENST00000461326 CLEC11AQ9Y240 323 aa13.07□□□□□ -0.32
CLK1-206ENST00000461326 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
CLK1-206ENST00000461326 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
CLK1-206ENST00000461326 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
CLK1-206ENST00000461326 SSUH2Q9Y2M2 353 aa13.02□□□□□ -0.33
CLK1-206ENST00000461326 EVX2Q03828 476 aa12.96□□□□□ -0.33
CLK1-206ENST00000461326 C19orf67A6NJJ6 358 aa12.86□□□□□ -0.35
CLK1-206ENST00000461326 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK1-206ENST00000461326 PRR29P0C7W0 189 aa12.83□□□□□ -0.36
CLK1-206ENST00000461326 CHADLQ6NUI6 762 aa12.79□□□□□ -0.36
CLK1-206ENST00000461326 GABBR2O75899 941 aa12.72□□□□□ -0.37
CLK1-206ENST00000461326 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
CLK1-206ENST00000461326 FARP1Q9Y4F1 1045 aaPredicted RBP12.61□□□□□ -0.39
CLK1-206ENST00000461326 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
CLK1-206ENST00000461326 CLCN6P51797 869 aa12.55□□□□□ -0.4
CLK1-206ENST00000461326 LHX8Q68G74 356 aa12.55□□□□□ -0.4
CLK1-206ENST00000461326 STAG3Q9UJ98 1225 aa12.5□□□□□ -0.41
CLK1-206ENST00000461326 ZNF579Q8NAF0 562 aaKnown RBP12.4□□□□□ -0.42
CLK1-206ENST00000461326 DCBLD2Q96PD2 775 aa12.4□□□□□ -0.42
CLK1-206ENST00000461326 CREBZFQ9NS37 354 aa12.4□□□□□ -0.42
CLK1-206ENST00000461326 ZRANB1Q9UGI0 708 aa12.4□□□□□ -0.42
CLK1-206ENST00000461326 SPDYE4A6NLX3 237 aa12.39□□□□□ -0.43
CLK1-206ENST00000461326 POTEIP0CG38 1075 aa12.39□□□□□ -0.43
CLK1-206ENST00000461326 EHMT2Q96KQ7 1210 aa12.39□□□□□ -0.43
CLK1-206ENST00000461326 PAK3O75914 559 aaPredicted RBP12.32□□□□□ -0.44
CLK1-206ENST00000461326 NPM1P06748 294 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLK1-206ENST00000461326 GALR2O43603 387 aaPredicted RBP12.23□□□□□ -0.45
CLK1-206ENST00000461326 PHF12Q96QT6 1004 aa12.16□□□□□ -0.46
CLK1-206ENST00000461326 MNX1P50219 401 aaPredicted RBP12.13□□□□□ -0.47
CLK1-206ENST00000461326 OTUD5Q96G74 571 aa12.02□□□□□ -0.49
CLK1-206ENST00000461326 PROM2Q8N271 834 aa12.01□□□□□ -0.49
CLK1-206ENST00000461326 MS4A3Q96HJ5 214 aa12□□□□□ -0.49
CLK1-206ENST00000461326 POTEB2H3BUK9 544 aa11.98□□□□□ -0.49
CLK1-206ENST00000461326 PLEKHG5O94827 1062 aa11.97□□□□□ -0.49
CLK1-206ENST00000461326 ASTLQ6HA08 431 aaPredicted RBP11.97□□□□□ -0.49
CLK1-206ENST00000461326 PELP1Q8IZL8 1130 aaKnown RBP11.97□□□□□ -0.49
CLK1-206ENST00000461326 TSPYL2Q9H2G4 693 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms