RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 STAT2P52630 851 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 MTTPP55157 894 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 TMED1Q13445 227 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 BMPR2Q13873 1038 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 GK3PQ14409 553 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 ZYXQ15942 572 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 ABCB5Q2M3G0 1257 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 SMTNL2Q2TAL5 461 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 CC2D2BQ6DHV5 1058 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 DCUN1D2Q6PH85 259 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PAOXQ6QHF9 649 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 MAVSQ7Z434 540 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 WDR75Q8IWA0 830 aaKnown RBP11.1□□□□□ -0.63
USP54-204ENST00000422491 SEPT12Q8IYM1 358 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 EFCAB3Q8N7B9 438 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 CERKQ8TCT0 537 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 BSNDQ8WZ55 320 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 Q9H521 79 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 SMYD2Q9NRG4 433 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PSMD13Q9UNM6 376 aa11.1□□□□□ -0.63
USP54-204ENST00000422491 PTPRJQ12913 1337 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 HMX2A2RU54 273 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TMEM221A6NGB7 291 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 ITM2AO43736 263 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 FAM189A1O60320 539 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 UGT1A9O60656 530 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 FBXO21O94952 628 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CALB1P05937 261 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CDH2P19022 906 aaPredicted RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 IL1R2P27930 398 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 DMP1Q13316 513 aaPredicted RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 KRT81Q14533 505 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CNGA3Q16281 694 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 KLHL35Q6PF15 583 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TICAM1Q8IUC6 712 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 ARFGAP1Q8N6T3 406 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CEP70Q8NHQ1 597 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TFB1MQ8WVM0 346 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 ZNF606Q8WXB4 792 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 KAT6AQ92794 2004 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TEKT1Q969V4 418 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CFAP36Q96G28 342 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 MMP19Q99542 508 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 SHCBP1LQ9BZQ2 653 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 NRDE2Q9H7Z3 1164 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 UGT1A7Q9HAW7 530 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 UGT1A10Q9HAW8 530 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 UGT1A8Q9HAW9 530 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 APOBEC2Q9Y235 224 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 DNAJC16Q9Y2G8 782 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 AP4B1Q9Y6B7 739 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 CEPT1Q9Y6K0 416 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 MYOCOSA0A1B0GUC4 107 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 LYPLA1O75608 230 aaPredicted RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 TOP3BO95985 862 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 SRGAP2CP0DJJ0 459 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 SRGAP2BP0DMP2 458 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 GARTP22102 1010 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 YWHAZP63104 245 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 CBX3Q13185 183 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 KCNT1Q5JUK3 1230 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 SYCP2LQ5T4T6 812 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TEDDM1Q5T9Z0 273 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 MBLAC2Q68D91 279 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 PRR5LQ6MZQ0 368 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 TSHZ1Q6ZSZ6 1077 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 FRMD7Q6ZUT3 714 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 ZBTB8BQ8NAP8 495 aaPredicted RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 FNDC8Q8TC99 324 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 PRPF18Q99633 342 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 NTPCRQ9BSD7 190 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 MRPL1Q9BYD6 325 aaKnown RBP11.09□□□□□ -0.63
USP54-204ENST00000422491 COA1Q9GZY4 146 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 POPDC2Q9HBU9 364 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 KMT5AQ9NQR1 393 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 FAM198AQ9UFP1 575 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 APPL1Q9UKG1 709 aa11.09□□□□□ -0.63
USP54-204ENST00000422491 SLX4Q8IY92 1834 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 HNRNPDLO14979 420 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 RIMBP2O15034 1052 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 KDELR1P24390 212 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ZNF132P52740 706 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 EIF3EP60228 445 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 PEX6Q13608 980 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 PSMD6Q15008 389 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 LGSNQ5TDP6 509 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 TRMT1LQ7Z2T5 733 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 C4orf19Q8IY42 314 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ADGRF2Q8IZF7 708 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 NDUFAF2Q8N183 169 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ZNF513Q8N8E2 541 aaPredicted RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 DDI1Q8WTU0 396 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 SNRNP27Q8WVK2 155 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 JDP2Q8WYK2 163 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 CMTM5Q96DZ9 223 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 SH3GLB1Q9Y371 365 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 H3BSA7 217 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 APOC4-APOC2K7ER74 178 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ADCY3O60266 1144 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms