RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CALN1Q9BXU9 219 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 RASSF4Q9H2L5 321 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 CCSER2Q9H7U1 834 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 MRPL47Q9HD33 250 aaKnown RBP12.23□□□□□ -0.45
SKA3-203ENST00000400018 CHST7Q9NS84 486 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 HCFC1R1Q9NWW0 138 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 BCCIPQ9P287 314 aaKnown RBP eCLIP12.23□□□□□ -0.45
SKA3-203ENST00000400018 INSL6Q9Y581 213 aa12.23□□□□□ -0.45
SKA3-203ENST00000400018 FAM72CH0Y354 149 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 TBC1D4O60343 1298 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 KRT1P04264 644 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 TAF10Q12962 218 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 LONRF2Q1L5Z9 754 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 STXBP5Q5T5C0 1151 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 FAM72AQ5TYM5 149 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 FAM72DQ6L9T8 149 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 FAM72BQ86X60 149 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 C10orf67Q8IYJ2 551 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 FAM161BQ96MY7 647 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 TSPAN18Q96SJ8 248 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 RAD9AQ99638 391 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 LRRC1Q9BTT6 524 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 HTATIP2Q9BUP3 242 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 UBE2OQ9C0C9 1292 aaKnown RBP12.22□□□□□ -0.45
SKA3-203ENST00000400018 ENTPD7Q9NQZ7 604 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.22□□□□□ -0.45
SKA3-203ENST00000400018 PCDHB5Q9Y5E4 795 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 SCINQ9Y6U3 715 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 BPTFQ12830 3046 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 KIF2AO00139 706 aaPredicted RBP12.22□□□□□ -0.45
SKA3-203ENST00000400018 TNFRSF10BO14763 440 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 TRIM66O15016 1216 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 GLUD2P49448 558 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 HTRA4P83105 476 aaPredicted RBP12.22□□□□□ -0.45
SKA3-203ENST00000400018 SLC25A11Q02978 314 aaKnown RBP12.22□□□□□ -0.45
SKA3-203ENST00000400018 ADGRD2Q7Z7M1 963 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 DDX42Q86XP3 938 aaKnown RBP eCLIP12.22□□□□□ -0.45
SKA3-203ENST00000400018 C12orf76Q8N812 135 aaPredicted RBP12.22□□□□□ -0.45
SKA3-203ENST00000400018 HERVK_113Q902F9 699 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 PBX4Q9BYU1 374 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 DSEQ9UL01 958 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 USP18Q9UMW8 372 aa12.22□□□□□ -0.45
SKA3-203ENST00000400018 PTPRDP23468 1912 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SYN3O14994 580 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SETSIPP0DME0 302 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 MYBL1P10243 752 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SDC4P31431 198 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 VPS41P49754 854 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SLC8A3P57103 927 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 YWHAZP63104 245 aaKnown RBP12.21□□□□□ -0.45
SKA3-203ENST00000400018 PLD1Q13393 1074 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 PSRC1Q6PGN9 363 aaPredicted RBP12.21□□□□□ -0.45
SKA3-203ENST00000400018 HS6ST3Q8IZP7 471 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.21□□□□□ -0.45
SKA3-203ENST00000400018 SPATA4Q8NEY3 305 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 CASP10Q92851 521 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 BHMTQ93088 406 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 VCPIP1Q96JH7 1222 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 PNKPQ96T60 521 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 TMEM175Q9BSA9 504 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SIK2Q9H0K1 926 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 SMG9Q9H0W8 520 aaKnown RBP12.21□□□□□ -0.45
SKA3-203ENST00000400018 NKX2-4Q9H2Z4 354 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 AMACRQ9UHK6 382 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 DMGDHQ9UI17 866 aaKnown RBP12.21□□□□□ -0.45
SKA3-203ENST00000400018 PCDHB12Q9Y5F1 795 aa12.21□□□□□ -0.45
SKA3-203ENST00000400018 TRDMT1O14717 391 aaKnown RBP12.21□□□□□ -0.46
SKA3-203ENST00000400018 TGM5O43548 720 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 TADA3O75528 432 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 BAIAP3O94812 1187 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 URODP06132 367 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 CTNNA1P35221 906 aaKnown RBP12.21□□□□□ -0.46
SKA3-203ENST00000400018 C11orf63Q6NUN7 778 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 CMTR2Q8IYT2 770 aaKnown RBP12.21□□□□□ -0.46
SKA3-203ENST00000400018 FAXDC2Q96IV6 333 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 SLC22A12Q96S37 553 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 CSNK1G1Q9HCP0 422 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 ETNK2Q9NVF9 386 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 DDIT4Q9NX09 232 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 IP6K2Q9UHH9 426 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 STRIP2Q9ULQ0 834 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 PCDHA3Q9Y5H8 950 aa12.21□□□□□ -0.46
SKA3-203ENST00000400018 PRRG1O14668 218 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 CREB3O43889 395 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 MTA2O94776 668 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 EFEMP2O95967 443 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 LTFP02788 710 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 ZNF143P52747 638 aaPredicted RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 NTHL1P78549 312 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TWF1Q12792 350 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 GPR17Q13304 367 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TTC27Q6P3X3 843 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 ANKS3Q6ZW76 656 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TAC4Q86UU9 113 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 RNF168Q8IYW5 571 aaPredicted RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 WBP2Q969T9 261 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TRIM11Q96F44 468 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TRIM51Q9BSJ1 452 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 SNRNP25Q9BV90 132 aaKnown RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 DHX35Q9H5Z1 703 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms