RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 HPS6Q86YV9 775 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 ABRAQ8N0Z2 381 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 NDUFAF2Q8N183 169 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 ARHGAP18Q8N392 663 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 RNF148Q8N7C7 305 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 PRPF31Q8WWY3 499 aaKnown RBP10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 MXRA8Q9BRK3 442 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 GRIP2Q9C0E4 1043 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 IFT122Q9HBG6 1241 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 APOBEC3GQ9HC16 384 aaKnown RBP10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 PCDH9Q9HC56 1237 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 ACSS2Q9NR19 701 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 KCND2Q9NZV8 630 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 ATXN10Q9UBB4 475 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 SLC9A2Q9UBY0 812 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 PCDHGB4Q9UN71 923 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 PCDHGB5Q9Y5G0 923 aa10.27□□□□□ -0.77
PTCHD4-202ENST00000398738 RBP3P10745 1247 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 LIG4P49917 911 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 NLRP11P59045 1033 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 EIF3EP60228 445 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF252P-AS1Q0IIN9 211 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MYBPC2Q14324 1141 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 PDK3Q15120 406 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 GSTA3Q16772 222 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 EML3Q32P44 896 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 TDRD10Q5VZ19 366 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 NET1Q7Z628 596 aaPredicted RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 GALNT4Q8N4A0 578 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 FAF2Q96CS3 445 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 PTPRJQ12913 1337 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 H7C0C1 242 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 RAG1P15918 1043 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 NELFEP18615 380 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ATP5OP48047 213 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 SLC18A1P54219 525 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MMRN1Q13201 1228 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 KRT72Q14CN4 511 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 EFHC1Q5JVL4 640 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 BSPRYQ5W0U4 402 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 RNF111Q6ZNA4 994 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 DHDDSQ86SQ9 333 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 USP37Q86T82 979 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MYLK4Q86YV6 388 aaPredicted RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 GPD1LQ8N335 351 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 NME8Q8N427 588 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF606Q8WXB4 792 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 CNBD2Q96M20 576 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 WWP1Q9H0M0 922 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 COL20A1Q9P218 1284 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 STRIP2Q9ULQ0 834 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNRF3Q9ULT6 936 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 SCINQ9Y6U3 715 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 UTRNP46939 3433 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ARFGEF1Q9Y6D6 1849 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MAGEB3O15480 346 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ETV4P43268 484 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 BPIFB4P59827 614 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 RPL10AP62906 217 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MTMR1Q13613 665 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MYBPC3Q14896 1274 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 CIAPIN1Q6FI81 312 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 DEFB107AQ8IZN7 70 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 KCTD6Q8NC69 237 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 SPATA18Q8TC71 538 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 ALKBH8Q96BT7 664 aaKnown RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MMADHCQ9H3L0 296 aaPredicted RBP10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 S100A14Q9HCY8 104 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 MAN1C1Q9NR34 630 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 TMOD2Q9NZR1 351 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 SLC17A6Q9P2U8 582 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 CCPG1Q9ULG6 757 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 TELO2Q9Y4R8 837 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 NUB1Q9Y5A7 615 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 HEY1Q9Y5J3 304 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 SNCAIPQ9Y6H5 919 aa10.26□□□□□ -0.77
PTCHD4-202ENST00000398738 PLSCR1O15162 318 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 ADCY3O60266 1144 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 RAD17O75943 681 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 APRTP07741 180 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 F7P08709 466 aaPredicted RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 VIL1P09327 827 aaKnown RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 RFC1P35251 1148 aaPredicted RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 CDKN2BP42772 138 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 GALK1P51570 392 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 RAP1GDS1P52306 607 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 GCNT1Q02742 428 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 LSAMPQ13449 338 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 CUL2Q13617 745 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 GK3PQ14409 553 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 R3HDM1Q15032 1099 aaKnown RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 AOC3Q16853 763 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 CDO1Q16878 200 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 FAM26DQ5JW98 314 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 TTLL6Q8N841 843 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 MZB1Q8WU39 189 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 OLFM3Q96PB7 478 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 TCHPQ9BT92 498 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 GLIS2Q9BZE0 524 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms