RNA–Protein interactions for RNA: ENST00000358025.7

SYNE2-204, Transcript of spectrin repeat containing nuclear envelope protein 2, human

APPRIS P3 TSL 5 BASIC

Gene SYNE2, Length 21,842 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-204	ENST00000358025	XKR3	Q5GH77	459 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	PIK3C3	Q8NEB9	887 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	USP13	Q92995	863 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	ROPN1L	Q96C74	230 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	HDAC11	Q96DB2	347 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	CEP19	Q96LK0	163 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	COMMD8	Q9NX08	183 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	UBP1	Q9NZI7	540 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	FLT1	P17948	1338 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	AKAP3	O75969	853 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	DNAJC10	Q8IXB1	793 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	ADGRF4	Q8IZF3	695 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	FAM84B	Q96KN1	310 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	DYRK4	Q9NR20	520 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	C3orf18	Q9UK00	162 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	SNCAIP	Q9Y6H5	919 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	SLC30A1	Q9Y6M5	507 aa		4.25	□□□□□ -1.73
SYNE2-204	ENST00000358025	CPS1	P31327	1500 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TRPC1	P48995	793 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	FAXC	Q5TGI0	409 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TRIM67	Q6ZTA4	783 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SHC3	Q92529	594 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SRPK1	Q96SB4	655 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CALN1	Q9BXU9	219 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CCNA2	P20248	432 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	PSMC1	P62191	440 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CCNYL2	Q5T2Q4	361 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	GIPC3	Q8TF64	312 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	STARD8	Q92502	1023 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	MRPL48	Q96GC5	212 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	AURKB	Q96GD4	344 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	HIPK3	Q9H422	1215 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CROT	Q9UKG9	612 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	UST	Q9Y2C2	406 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZBBX	A8MT70	800 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	DNALI1	O14645	258 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CD4	P01730	458 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	FAM163B	P0C2L3	166 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ITGA1	P56199	1179 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SPANXN3	Q5MJ09	141 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SLFN13	Q68D06	897 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TRIM51	Q9BSJ1	452 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	GRHL1	Q9NZI5	618 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	HEATR9	A2RTY3	570 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CNOT3	O75175	753 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	IFNA14	P01570	189 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RBP3	P10745	1247 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TIE1	P35590	1138 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	LRRC36	Q1X8D7	754 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	MYLK4	Q86YV6	388 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ADA2	Q9NZK5	511 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TMX2	Q9Y320	296 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZNF711	Q9Y462	761 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	PHGDH	O43175	533 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	PRKAB2	O43741	272 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	MRPS9	P82933	396 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	LRRC41	Q15345	812 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	DDB1	Q16531	1140 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RBM48	Q5RL73	367 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	EPS8L1	Q8TE68	723 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SLC10A4	Q96EP9	437 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CRAMP1	Q96RY5	1269 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZNF696	Q9H7X3	374 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ZNF229	Q9UJW7	825 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	hCG_1642624	A0A1W2PR95	340 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	NOP56	O00567	594 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	MPP4	Q96JB8	637 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	PIGS	Q96S52	555 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	WARS2	Q9UGM6	360 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TMEM131L	A2VDJ0	1609 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	COQ9	O75208	318 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TADA2A	O75478	443 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	ITGA10	O75578	1167 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SLC2A3	P11169	496 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	CD19	P15391	556 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	NFKB1	P19838	968 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	EPHB2	P29323	1055 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	PLEKHG6	Q3KR16	790 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	FAM102B	Q5T8I3	360 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RAPH1	Q70E73	1250 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RMND5B	Q96G75	393 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RABL2B	Q9UNT1	228 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	POTEM	A6NI47	508 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	BBIP1	A8MTZ0	92 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	DFNA5	O60443	496 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	TRPA1	O75762	1119 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SNRPB2	P08579	225 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	RAB14	P61106	215 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	POTEH	Q6S545	545 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	POTEG	Q6S5H5	508 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	SPICE1	Q8N0Z3	855 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	FAM212A	Q96EL1	285 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	HPS4	Q9NQG7	708 aa		4.24	□□□□□ -1.73
SYNE2-204	ENST00000358025	EMSY	Q7Z589	1322 aa		4.24	□□□□□ -1.73

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