RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.2■□□□□ 0.02
HMGN3-202ENST00000344726 RWDD2AQ9UIY3 292 aa15.2■□□□□ 0.02
HMGN3-202ENST00000344726 NUDT5Q9UKK9 219 aa15.2■□□□□ 0.02
HMGN3-202ENST00000344726 TSPAN16Q9UKR8 245 aa15.2■□□□□ 0.02
HMGN3-202ENST00000344726 RALGAPA1Q6GYQ0 2036 aa15.2■□□□□ 0.02
HMGN3-202ENST00000344726 E2F8A0AVK6 867 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 P4HA2O15460 535 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 GABBR2O75899 941 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 GNA14O95837 355 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 CALCAP01258 141 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 AFPP02771 609 aaKnown RBP15.19■□□□□ 0.02
HMGN3-202ENST00000344726 IRF1P10914 325 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 RARGP13631 454 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 NR1H3Q13133 447 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 SIM2Q14190 667 aaPredicted RBP15.19■□□□□ 0.02
HMGN3-202ENST00000344726 SGO2Q562F6 1265 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 RAB41Q5JT25 222 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 CCDC186Q7Z3E2 898 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 IRF2BP1Q8IU81 584 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 BBS7Q8IWZ6 715 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 PPM1KQ8N3J5 372 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 EHBP1Q8NDI1 1231 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 TFAP2BQ92481 460 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 HHIPQ96QV1 700 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 ZSWIM1Q9BR11 485 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 UBXN6Q9BZV1 441 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 DNAI2Q9GZS0 605 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 LMBRD1Q9NUN5 540 aa15.19■□□□□ 0.02
HMGN3-202ENST00000344726 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.19■□□□□ 0.02
HMGN3-202ENST00000344726 LAMA1P25391 3075 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 O00370 1275 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 SLC9A3R1O14745 358 aaPredicted RBP15.18■□□□□ 0.02
HMGN3-202ENST00000344726 VDRP11473 427 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 CD19P15391 556 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 ATP5C1P36542 298 aaKnown RBP15.18■□□□□ 0.02
HMGN3-202ENST00000344726 SEC13P55735 322 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 YWHAEP62258 255 aaKnown RBP15.18■□□□□ 0.02
HMGN3-202ENST00000344726 PDE4CQ08493 712 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 FBXO43Q4G163 708 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 PKDCCQ504Y2 493 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 LY6G5CQ5SRR4 150 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 LAIR1Q6GTX8 287 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 TMEM270Q6UE05 265 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 RRAGAQ7L523 313 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 PHTF2Q8N3S3 785 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 USP33Q8TEY7 942 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 CNOT6LQ96LI5 555 aaKnown RBP15.18■□□□□ 0.02
HMGN3-202ENST00000344726 KREMEN1Q96MU8 473 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 NACA2Q9H009 215 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 NAGPAQ9UK23 515 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 SLC8A2Q9UPR5 921 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 SH3BP1Q9Y3L3 701 aa15.18■□□□□ 0.02
HMGN3-202ENST00000344726 ATG13O75143 517 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 CCDC192P0DO97 292 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 HNRNPLP14866 589 aaKnown RBP eCLIP15.17■□□□□ 0.02
HMGN3-202ENST00000344726 TKTL1P51854 596 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 BCAT1P54687 386 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 SPEM2Q0P670 501 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 CETN1Q12798 172 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 DMC1Q14565 340 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 DPCR1Q3MIW9 517 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 SYT13Q7L8C5 426 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 BHLHA9Q7RTU4 235 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 FAM160A2Q8N612 972 aaPredicted RBP15.17■□□□□ 0.02
HMGN3-202ENST00000344726 MLKLQ8NB16 471 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 UBA3Q8TBC4 463 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 NDRG1Q92597 394 aaKnown RBP15.17■□□□□ 0.02
HMGN3-202ENST00000344726 P2RY11Q96G91 374 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 INTS2Q9H0H0 1204 aaKnown RBP15.17■□□□□ 0.02
HMGN3-202ENST00000344726 TBC1D14Q9P2M4 693 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 PCDHB4Q9Y5E5 795 aa15.17■□□□□ 0.02
HMGN3-202ENST00000344726 XPO1O14980 1071 aaKnown RBP15.16■□□□□ 0.02
HMGN3-202ENST00000344726 FGFR1OPO95684 399 aaKnown RBP15.16■□□□□ 0.02
HMGN3-202ENST00000344726 PAEPP09466 180 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ADH5P11766 374 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 CNR2P34972 360 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 PSEN1P49768 467 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ZNF132P52740 706 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 GCNT1Q02742 428 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 KDSRQ06136 332 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 BST2Q10589 180 aaKnown RBP15.16■□□□□ 0.02
HMGN3-202ENST00000344726 RSPO4Q2I0M5 234 aaPredicted RBP15.16■□□□□ 0.02
HMGN3-202ENST00000344726 C2orf27AQ580R0 203 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 C10orf120Q5SQS8 335 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 KLHDC10Q6PID8 442 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 HTR3DQ70Z44 454 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 TMEM25Q86YD3 366 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ETFBKMTQ8IXQ9 262 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ZNF276Q8N554 614 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 GAB3Q8WWW8 586 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 OTUB2Q96DC9 234 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ULBP1Q9BZM6 244 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 NUP62CLQ9H1M0 184 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 ZDHHC4Q9NPG8 344 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 DLL3Q9NYJ7 618 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 CLIC5Q9NZA1 410 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 DNMT3LQ9UJW3 386 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 GMEB2Q9UKD1 530 aa15.16■□□□□ 0.02
HMGN3-202ENST00000344726 CCDC163A0A0D9SF12 145 aa15.15■□□□□ 0.02
HMGN3-202ENST00000344726 TRIM24O15164 1050 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms