RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NOP56O00567 594 aaKnown RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 SLC26A4O43511 780 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 TGDSO95455 350 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 DHRS4L1P0CG22 281 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 STT3AP46977 705 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CCR3P51677 355 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 ATG16L1Q676U5 607 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CASC4Q6P4E1 433 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 SDCCAG8Q86SQ7 713 aaPredicted RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 FAM156AQ8NDB6 213 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 JOSD2Q8TAC2 188 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 SLC44A1Q8WWI5 657 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 ZNF606Q8WXB4 792 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 TRIM11Q96F44 468 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 TDRD3Q9H7E2 651 aaKnown RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 SMYD2Q9NRG4 433 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 PLLPQ9Y342 182 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 NUB1Q9Y5A7 615 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CNTNAP2Q9UHC6 1331 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 NRXN2Q9P2S2 1712 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 FKBP6O75344 327 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 STAMBPO95630 424 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CD19P15391 556 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 FGFR3P22607 806 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 TRIM42Q8IWZ5 723 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 STKLD1Q8NE28 680 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 DCUN1D1Q96GG9 259 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CCDC17Q96LX7 622 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 SEMA6AQ9H2E6 1030 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 FAF1Q9UNN5 650 aaPredicted RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 WDR64B1ANS9 1081 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 GRAP2O75791 330 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 ITGAVP06756 1048 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 SMIM18P0DKX4 95 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CRKP46108 304 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 DPYSL3Q14195 570 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CRY2Q49AN0 593 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 FASTKD1Q53R41 847 aaKnown RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 TMCO4Q5TGY1 634 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 ZSCAN18Q8TBC5 510 aaPredicted RBP14.9□□□□□ -0.02
SDC1-201ENST00000254351 SIKE1Q9BRV8 207 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 DCUN1D5Q9BTE7 237 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 CNTN3Q9P232 1028 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 BLOC1S6Q9UL45 172 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 SCINQ9Y6U3 715 aa14.9□□□□□ -0.02
SDC1-201ENST00000254351 TMEM191CA6NGB0 347 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 NFIBO00712 420 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 SIN3BO75182 1162 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 ZNF189O75820 626 aaPredicted RBP14.89□□□□□ -0.03
SDC1-201ENST00000254351 KRT37O76014 449 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 MMP10P09238 476 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 TMEM191BP0C7N4 346 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 CSH1P0DML2 217 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 CSH2P0DML3 217 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 RGS2P41220 211 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 SH3PXD2AQ5TCZ1 1133 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 PLEKHA7Q6IQ23 1121 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 OR5B17Q8NGF7 314 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 CEP170P1Q96L14 293 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 OXCT2Q9BYC2 517 aaPredicted RBP14.89□□□□□ -0.03
SDC1-201ENST00000254351 RNPEPQ9H4A4 650 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 COL20A1Q9P218 1284 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 NYAP2Q9P242 653 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 PI4KBQ9UBF8 816 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 FDFT1P37268 417 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 PPIDQ08752 370 aaKnown RBP14.89□□□□□ -0.03
SDC1-201ENST00000254351 DGKZQ13574 1117 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 CUL2Q13617 745 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 GPAT2Q6NUI2 795 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 SLC26A11Q86WA9 606 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 CHSY1Q86X52 802 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 GPD1LQ8N335 351 aa14.89□□□□□ -0.03
SDC1-201ENST00000254351 PRICKLE1Q96MT3 831 aaPredicted RBP14.89□□□□□ -0.03
SDC1-201ENST00000254351 SNRPAP09012 282 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 ABCG1P45844 678 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 RPL5P46777 297 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 LIG4P49917 911 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 GCNT1Q02742 428 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 SH2D4BQ5SQS7 431 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 TTC39BQ5VTQ0 682 aaPredicted RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 WDR75Q8IWA0 830 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 CPNE9Q8IYJ1 553 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 KIAA0319LQ8IZA0 1049 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF668Q96K58 619 aaPredicted RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF778Q96MU6 729 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 DHRS4Q9BTZ2 278 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ZNF358Q9NW07 568 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 AP4B1Q9Y6B7 739 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 MYH9P35579 1960 aaKnown RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 SERPINA6P08185 405 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 GRIA1P42261 906 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 CYLC2Q14093 348 aaPredicted RBP14.88□□□□□ -0.03
SDC1-201ENST00000254351 PSMD6Q15008 389 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 ATG14Q6ZNE5 492 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 MPP5Q8N3R9 675 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 RIN3Q8TB24 985 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 SLC35B2Q8TB61 432 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 MARK4Q96L34 752 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 KCND2Q9NZV8 630 aa14.88□□□□□ -0.03
SDC1-201ENST00000254351 BTBD7Q9P203 1132 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms