RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PON2Q15165 354 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 PDGFRLQ15198 375 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 CAMK4Q16566 473 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 WDR5BQ86VZ2 330 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 RALGPS2Q86X27 583 aaPredicted RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 CREBRFQ8IUR6 639 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 FUKQ8N0W3 1084 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 CRYBG2Q8N1P7 616 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 C12orf29Q8N999 325 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 PDZD8Q8NEN9 1154 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 SH3RF2Q8TEC5 729 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 ZCCHC14Q8WYQ9 949 aaKnown RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 SEMA4DQ92854 862 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 CYFIP2Q96F07 1278 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 HEXIM2Q96MH2 286 aaKnown RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 METTL14Q9HCE5 456 aaKnown RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 VPS45Q9NRW7 570 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 RXFP3Q9NSD7 469 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 SMPD4Q9NXE4 827 aa12.31□□□□□ -0.44
CLN3-257ENST00000637110 CHORDC1Q9UHD1 332 aaPredicted RBP12.31□□□□□ -0.44
CLN3-257ENST00000637110 ARSAP15289 507 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 CD44P16070 742 aaKnown RBP12.3□□□□□ -0.44
CLN3-257ENST00000637110 SLC5A3P53794 718 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 LRMPQ12912 555 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 CCDC6Q16204 474 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 DGKKQ5KSL6 1271 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 DAB2IPQ5VWQ8 1189 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 PAQR9Q6ZVX9 377 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 CPA6Q8N4T0 437 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 SCAMP5Q8TAC9 235 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 CEP63Q96MT8 703 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 TWNKQ96RR1 684 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 FAM83CQ9BQN1 747 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 TTLL2Q9BWV7 592 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 TMEM30AQ9NV96 361 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 GCNT4Q9P109 453 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 WNT6Q9Y6F9 365 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 PTPRDP23468 1912 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 DENND4CQ5VZ89 1909 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 MYH10P35580 1976 aa12.3□□□□□ -0.44
CLN3-257ENST00000637110 OBSL1O75147 1896 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 LEFTY2O00292 366 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CILPO75339 1184 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 RPP40O75818 363 aaKnown RBP12.29□□□□□ -0.44
CLN3-257ENST00000637110 CCDC192P0DO97 292 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 PFKLP17858 780 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 INCA1Q0VD86 236 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CETN1Q12798 172 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 NR1H3Q13133 447 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 MORC3Q14149 939 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 GAS6Q14393 721 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CBWD6Q4V339 395 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CBWD3Q5JTY5 395 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 PLA2G2CQ5R387 149 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CBWD5Q5RIA9 395 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 TXNDC11Q6PKC3 985 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 FILIP1Q7Z7B0 1213 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 TTC39CQ8N584 583 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 RIN3Q8TB24 985 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 OSCP1Q8WVF1 389 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 GAB3Q8WWW8 586 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 GATA6Q92908 595 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 TATDN2Q93075 761 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 EXOC4Q96A65 974 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 SMOQ99835 787 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 TMEM121BQ9BXQ6 578 aaPredicted RBP12.29□□□□□ -0.44
CLN3-257ENST00000637110 RNF38Q9H0F5 515 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 FBXO44Q9H4M3 255 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 HPS4Q9NQG7 708 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CISHQ9NSE2 258 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 RBM12Q9NTZ6 932 aaKnown RBP12.29□□□□□ -0.44
CLN3-257ENST00000637110 ARHGAP26Q9UNA1 814 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 CPQQ9Y646 472 aa12.29□□□□□ -0.44
CLN3-257ENST00000637110 GCN1Q92616 2671 aaKnown RBP12.29□□□□□ -0.44
CLN3-257ENST00000637110 PPP1R3GB7ZBB8 358 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 TAF4O00268 1085 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 SCAMP3O14828 347 aaKnown RBP12.28□□□□□ -0.44
CLN3-257ENST00000637110 BEST1O76090 585 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 MPLP40238 635 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 GRSF1Q12849 480 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLN3-257ENST00000637110 USP4Q13107 963 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 PAK1Q13153 545 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 ZNF77Q15935 545 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 HECTD3Q5T447 861 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 ZC3H3Q8IXZ2 948 aaKnown RBP12.28□□□□□ -0.44
CLN3-257ENST00000637110 OVCA2Q8WZ82 227 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 ATP2A3Q93084 1043 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 TMEM176AQ96HP8 235 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 HNRNPABQ99729 332 aaKnown RBP12.28□□□□□ -0.44
CLN3-257ENST00000637110 ARID3AQ99856 593 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 EDEM2Q9BV94 578 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 SRRTQ9BXP5 876 aaKnown RBP12.28□□□□□ -0.44
CLN3-257ENST00000637110 ECT2Q9H8V3 914 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 COMMD8Q9NX08 183 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 GMIPQ9P107 970 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 CFAP97Q9P2B7 532 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 WASF3Q9UPY6 502 aa12.28□□□□□ -0.44
CLN3-257ENST00000637110 DSPP15924 2871 aaKnown RBP12.28□□□□□ -0.44
CLN3-257ENST00000637110 CCDC163A0A0D9SF12 145 aa12.27□□□□□ -0.45
CLN3-257ENST00000637110 TNFRSF10BO14763 440 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms