RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	SLC28A3	Q9HAS3	691 aa		10.05	□□□□□ -0.8
CACNA1A-223	ENST00000636058	POPDC2	Q9HBU9	364 aa		10.05	□□□□□ -0.8
CACNA1A-223	ENST00000636058	FBXW11	Q9UKB1	542 aa		10.05	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SCML2	Q9UQR0	700 aa		10.05	□□□□□ -0.8
CACNA1A-223	ENST00000636058	YIPF1	Q9Y548	306 aa		10.05	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TNRC18	O15417	2968 aa	Predicted RBP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SLC38A8	A6NNN8	435 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PRRG1	O14668	218 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	NCK2	O43639	380 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	LPXN	O60711	386 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	LTF	P02788	710 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PDGFRA	P16234	1089 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PSMA2	P25787	234 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	KLRC2	P26717	231 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	YWHAQ	P27348	245 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SDC4	P31431	198 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ELF1	P32519	619 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MATK	P42679	507 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PTPN9	P43378	593 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CLCN4	P51793	760 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	AMPD2	Q01433	879 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ACAP1	Q15027	740 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CCDC14	Q49A88	953 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PAPD7	Q5XG87	772 aa	Known RBP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CPNE8	Q86YQ8	564 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	DEFB106A	Q8N104	65 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MICAL1	Q8TDZ2	1067 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ARNTL2	Q8WYA1	636 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CD101	Q93033	1021 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	NT5C3B	Q969T7	300 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	FAM149B1	Q96BN6	582 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TIFA	Q96CG3	184 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	HES6	Q96HZ4	224 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CFAP57	Q96MR6	1250 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CNPY3	Q9BT09	278 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	DDX23	Q9BUQ8	820 aa	Known RBP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TRIM62	Q9BVG3	475 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TTLL2	Q9BWV7	592 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	LMAN2L	Q9H0V9	348 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	AMFR	Q9UKV5	643 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	HYOU1	Q9Y4L1	999 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	INSL5	Q9Y5Q6	135 aa		10.04	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ZNF638	Q14966	1978 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	EPOP	A6NHQ4	379 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MIF4GD	A9UHW6	222 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	DDX3Y	O15523	660 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SPOP	O43791	374 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CLASP2	O75122	1294 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	LRCH4	O75427	683 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CSPG5	O95196	566 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	GLUD1	P00367	558 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SPATA31D3	P0C874	917 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PRLR	P16471	622 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	HMGA1	P17096	107 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CTNNA2	P26232	953 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CTNNA1	P35221	906 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	NOS2	P35228	1153 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ALDH1A3	P47895	512 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	YWHAG	P61981	247 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TWF1	Q12792	350 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	IFRD2	Q12894	506 aa	Predicted RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PLD1	Q13393	1074 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MTMR3	Q13615	1198 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	PTPRO	Q16827	1216 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SLC25A52	Q3SY17	297 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	DAB2IP	Q5VWQ8	1189 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SYPL2	Q5VXT5	272 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	BSPRY	Q5W0U4	402 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SPATA31D4	Q6ZUB0	917 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CCDC149	Q6ZUS6	474 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	BNIPL	Q7Z465	357 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SCD5	Q86SK9	330 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MON1A	Q86VX9	555 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ARHGAP18	Q8N392	663 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	ARFGAP1	Q8N6T3	406 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SLC7A14	Q8TBB6	771 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	GIPC2	Q8TF65	315 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	GDPD5	Q8WTR4	605 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	CENPI	Q92674	756 aa	Predicted RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	GOLGA1	Q92805	767 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	TRMT2B	Q96GJ1	504 aa	Known RBP	10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	MYRFL	Q96LU7	910 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	NPY6R	Q99463	290 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	EHD2	Q9NZN4	543 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	SNX12	Q9UMY4	172 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	NAALADL1	Q9UQQ1	740 aa		10.03	□□□□□ -0.8
CACNA1A-223	ENST00000636058	RANBP2	P49792	3224 aa	Known RBP	10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058		A0A1W2PPC1	479 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058		A0A1W2PQH9	124 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	CCDC66	A2RUB6	948 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	CAPN9	O14815	690 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	RNF8	O76064	485 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	C8A	P07357	584 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	ZDHHC11B	P0C7U3	371 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	CSH1	P0DML2	217 aa		10.02	□□□□□ -0.81
CACNA1A-223	ENST00000636058	CSH2	P0DML3	217 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms