RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TSSK1BQ9BXA7 367 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 RAB6CQ9H0N0 254 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 C2CD2Q9Y426 696 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 TTLL3Q9Y4R7 772 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 CSADQ9Y600 493 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 IKBKGQ9Y6K9 419 aa13.3□□□□□ -0.28
LINC00540-203ENST00000631321 PAPPA2Q9BXP8 1791 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 E5RJQ4 531 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 H7C0C1 242 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 RPSAP08865 295 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 ATP5OP48047 213 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 CLNS1AP54105 237 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 YWHAGP61981 247 aaKnown RBP eCLIP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 YWHAZP63104 245 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 CRYMQ14894 314 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 C15orf59Q2T9L4 293 aaPredicted RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 SLC9A4Q6AI14 798 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 OR6B2Q6IFH4 312 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF449Q6P9G9 518 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 ENDOVQ8N8Q3 282 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 AFG1LQ8WV93 481 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 APBB2Q92870 758 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PIWIL1Q96J94 861 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TBCBQ99426 244 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 RNPEPQ9H4A4 650 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 POPDC2Q9HBU9 364 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 ERAP1Q9NZ08 941 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TRDMT1O14717 391 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 GSTA2P09210 222 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 GM2AP17900 193 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 CALB2P22676 271 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PRKCHP24723 683 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 RBP5P82980 135 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PKDCCQ504Y2 493 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TTC39BQ5VTQ0 682 aaPredicted RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 NT5DC4Q86YG4 428 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 MCUQ8NE86 351 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PTCD3Q96EY7 689 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 KCNK13Q9HB14 408 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PLAC1Q9HBJ0 212 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 PCDH18Q9HCL0 1135 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TXNRD2Q9NNW7 524 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 BATF3Q9NR55 127 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 RAB6BQ9NRW1 208 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 TSPAN16Q9UKR8 245 aa13.29□□□□□ -0.28
LINC00540-203ENST00000631321 MTO1Q9Y2Z2 717 aaKnown RBP13.29□□□□□ -0.28
LINC00540-203ENST00000631321 APOL1O14791 398 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 TXNP10599 105 aaKnown RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 PYGBP11216 843 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 EPHB2P29323 1055 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 OVGP1Q12889 678 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 KRT81Q14533 505 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 ANKRD20A2Q5SQ80 823 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 ANKRD20A1Q5TYW2 823 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 ANKRD20A3Q5VUR7 823 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 FAM91A1Q658Y4 838 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 C1orf228Q6PIY5 440 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 OLFML1Q6UWY5 402 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 C4orf22Q6V702 233 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 PRPF39Q86UA1 669 aaKnown RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 CAND1Q86VP6 1230 aaKnown RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 LRRC6Q86X45 466 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 GPC2Q8N158 579 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 CFAP61Q8NHU2 1237 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 STK32AQ8WU08 396 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 SKA1Q96BD8 255 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 LRRC39Q96DD0 335 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 FAM111AQ96PZ2 611 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 NT5C1AQ9BXI3 368 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 MKS1Q9NXB0 559 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 RBPJLQ9UBG7 517 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 NKX1-2Q9UD57 310 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 DCTN4Q9UJW0 460 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 MGAMO43451 1857 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 A0A087WZ62 844 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 CXCL11O14625 94 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 MDM4O15151 490 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 KCNN4O15554 427 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 AVILO75366 819 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 DLDP09622 509 aaKnown RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 SETSIPP0DME0 302 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 INSRRP14616 1297 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 ARF4P18085 180 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 CCNFP41002 786 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 CDK16Q00536 496 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 TTLL4Q14679 1199 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 KCTD2Q14681 263 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 PCDH19Q8TAB3 1148 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 FBXO41Q8TF61 875 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 KHSRPQ92945 711 aaKnown RBP eCLIP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 MMP19Q99542 508 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 FDXACB1Q9BRP7 624 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF670Q9BS34 389 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 SLC4A5Q9BY07 1137 aa13.28□□□□□ -0.28
LINC00540-203ENST00000631321 TPBGLP0DKB5 382 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 MAGEA3P43357 314 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 SERPINB4P48594 390 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 ARFIP2P53365 341 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 BCAR1P56945 870 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms