RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CCL26Q9Y258 94 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 ZKSCAN5Q9Y2L8 839 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 LUC7L2Q9Y383 392 aaKnown RBP13.38□□□□□ -0.27
PNKP-217ENST00000625216 USP34Q70CQ2 3546 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 RTN3O95197 1032 aaPredicted RBP13.37□□□□□ -0.27
PNKP-217ENST00000625216 HLA-DRAP01903 254 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 LMNAP02545 664 aaKnown RBP13.37□□□□□ -0.27
PNKP-217ENST00000625216 CKMP06732 381 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 UCHL3P15374 230 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 PIK3CAP42336 1068 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 CCR3P51677 355 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 NRLP54845 237 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 CSTF1Q05048 431 aaKnown RBP13.37□□□□□ -0.27
PNKP-217ENST00000625216 MTAPQ13126 283 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 NUP93Q8N1F7 819 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 FBXL13Q8NEE6 735 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 PDZD8Q8NEN9 1154 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 NELL1Q92832 810 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 EXOC4Q96A65 974 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 ELMO3Q96BJ8 720 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 SLITRK1Q96PX8 696 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 CYP2S1Q96SQ9 504 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 NAA15Q9BXJ9 866 aaKnown RBP13.37□□□□□ -0.27
PNKP-217ENST00000625216 ZNF518BQ9C0D4 1074 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 SDCBP2Q9H190 292 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 TRPC7Q9HCX4 862 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 PRMT8Q9NR22 394 aaPredicted RBP13.37□□□□□ -0.27
PNKP-217ENST00000625216 COMMD8Q9NX08 183 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 ARHGAP26Q9UNA1 814 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 PCDHGA2Q9Y5H1 932 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 R4GN57 208 aa13.37□□□□□ -0.27
PNKP-217ENST00000625216 PTPRZ1P23471 2315 aaPredicted RBP13.36□□□□□ -0.27
PNKP-217ENST00000625216 MYO15AQ9UKN7 3530 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 ZNF840PA6NDX5 716 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 LRRC53A6NM62 1247 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 SOX9P48436 509 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 JAM2P57087 298 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 USP46P62068 366 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 TNK2Q07912 1038 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 CETN1Q12798 172 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 MTF1Q14872 753 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 SCARA5Q6ZMJ2 495 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 RRAGAQ7L523 313 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 CACNA2D4Q7Z3S7 1137 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 SPEM1Q8N4L4 309 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 TTC39CQ8N584 583 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 ARL14EPQ8N8R7 260 aaPredicted RBP13.36□□□□□ -0.27
PNKP-217ENST00000625216 CCDC112Q8NEF3 446 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 OSCP1Q8WVF1 389 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 ATRIPQ8WXE1 791 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 OVCA2Q8WZ82 227 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 KAT5Q92993 513 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 SMARCD1Q96GM5 515 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 MED10Q9BTT4 135 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 DMAP1Q9NPF5 467 aaPredicted RBP13.36□□□□□ -0.27
PNKP-217ENST00000625216 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.36□□□□□ -0.27
PNKP-217ENST00000625216 RAB20Q9NX57 234 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 ZSCAN32Q9NX65 697 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 APEX2Q9UBZ4 518 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 DNAJC12Q9UKB3 198 aa13.36□□□□□ -0.27
PNKP-217ENST00000625216 RIF1Q5UIP0 2472 aaKnown RBP13.36□□□□□ -0.27
PNKP-217ENST00000625216 C2orf78A6NCI8 922 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 CLDN5O00501 218 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 PNMA6AP0CW24 399 aaPredicted RBP13.35□□□□□ -0.27
PNKP-217ENST00000625216 SKILP12757 684 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 YWHAQP27348 245 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 ASPAP45381 313 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 RAP1GAPP47736 663 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 CXCL12P48061 93 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 NDST1P52848 882 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 CACNA2D1P54289 1103 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 SLC7A9P82251 487 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 INCA1Q0VD86 236 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 TAF10Q12962 218 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 USP4Q13107 963 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 NR1H3Q13133 447 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 ZNF77Q15935 545 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 MEA1Q16626 185 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 WDR59Q6PJI9 974 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 TXNDC11Q6PKC3 985 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 PAQR9Q6ZVX9 377 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 ACOT1Q86TX2 421 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 FAM35AQ86V20 835 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 FUKQ8N0W3 1084 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 CPA6Q8N4T0 437 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 ZBTB44Q8NCP5 570 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 OR8K1Q8NGG5 319 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 TTC8Q8TAM2 541 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 SH3RF2Q8TEC5 729 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 SLC22A12Q96S37 553 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 BAG1Q99933 345 aaPredicted RBP13.35□□□□□ -0.27
PNKP-217ENST00000625216 EBF3Q9H4W6 596 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 FAM124BQ9H5Z6 455 aaPredicted RBP13.35□□□□□ -0.27
PNKP-217ENST00000625216 HPS4Q9NQG7 708 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 DUS2Q9NX74 493 aaKnown RBP13.35□□□□□ -0.27
PNKP-217ENST00000625216 IL37Q9NZH6 218 aa13.35□□□□□ -0.27
PNKP-217ENST00000625216 VPS13AQ96RL7 3174 aa13.34□□□□□ -0.27
PNKP-217ENST00000625216 CACNA1IQ9P0X4 2223 aa13.34□□□□□ -0.27
PNKP-217ENST00000625216 SOWAHDA6NJG2 315 aa13.34□□□□□ -0.27
PNKP-217ENST00000625216 TRDMT1O14717 391 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms