RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GKN1Q9NS71 199 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 SMPD4Q9NXE4 827 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 NAGPAQ9UK23 515 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 PIAS3Q9Y6X2 628 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 KANSL1LA0AUZ9 987 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 SHISA7A6NL88 538 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 SMTNL1A8MU46 457 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 LEFTY2O00292 366 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 THAP12O43422 761 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 MED7O43513 233 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 PNMA6AP0CW24 399 aaPredicted RBP15.32■□□□□ 0.04
VRK3-206ENST00000594090 ATP1A3P13637 1013 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 AVPR2P30518 371 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 PSEN1P49768 467 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 RAPGEF1Q13905 1077 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 MEA1Q16626 185 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 TRIM68Q6AZZ1 485 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 SCD5Q86SK9 330 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 DDX42Q86XP3 938 aaKnown RBP eCLIP15.32■□□□□ 0.04
VRK3-206ENST00000594090 PJA1Q8NG27 643 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 OSCP1Q8WVF1 389 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 ZNF606Q8WXB4 792 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 NAA15Q9BXJ9 866 aaKnown RBP15.32■□□□□ 0.04
VRK3-206ENST00000594090 ULBP1Q9BZM6 244 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 NACA2Q9H009 215 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 PLCB1Q9NQ66 1216 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 HPS4Q9NQG7 708 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.32■□□□□ 0.04
VRK3-206ENST00000594090 GTSE1Q9NYZ3 720 aa15.32■□□□□ 0.04
VRK3-206ENST00000594090 LRRC10BA6NIK2 292 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 FOXN3O00409 490 aaPredicted RBP15.31■□□□□ 0.04
VRK3-206ENST00000594090 PI15O43692 258 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 ZBED1O96006 694 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 RARGP13631 454 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 GLULP15104 373 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 ARSAP15289 507 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 COL9A1P20849 921 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 CD72P21854 359 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 RGS7P49802 495 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 KLK7P49862 253 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 KPNA1P52294 538 aaPredicted RBP15.31■□□□□ 0.04
VRK3-206ENST00000594090 MLLT6P55198 1093 aaPredicted RBP15.31■□□□□ 0.04
VRK3-206ENST00000594090 DRAP1Q14919 205 aaPredicted RBP15.31■□□□□ 0.04
VRK3-206ENST00000594090 IQCB1Q15051 598 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 PDGFRLQ15198 375 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 PM20D1Q6GTS8 502 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 PMF1Q6P1K2 205 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 BHLHA9Q7RTU4 235 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 FAM71AQ8IYT1 594 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 SIX6OS1Q8N1H7 587 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 ARHGAP18Q8N392 663 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 KIAA1958Q8N8K9 716 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 MSANTD3Q96H12 275 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 GANQ9H2C0 597 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 EBF3Q9H4W6 596 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 LTB4R2Q9NPC1 389 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 DUS2Q9NX74 493 aaKnown RBP15.31■□□□□ 0.04
VRK3-206ENST00000594090 SIK3Q9Y2K2 1263 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 HCN4Q9Y3Q4 1203 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 WNT6Q9Y6F9 365 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 MIA3Q5JRA6 1907 aa15.31■□□□□ 0.04
VRK3-206ENST00000594090 RALAP11233 206 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 CTHP32929 405 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 ATP5C1P36542 298 aaKnown RBP15.3■□□□□ 0.04
VRK3-206ENST00000594090 GPD2P43304 727 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 SOX9P48436 509 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 IFNAR2P48551 515 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 YWHAGP61981 247 aaKnown RBP eCLIP15.3■□□□□ 0.04
VRK3-206ENST00000594090 UBXN1Q04323 297 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 PTK2Q05397 1052 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 RUNX3Q13761 415 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 UBXN2BQ14CS0 331 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 ITPRIPL2Q3MIP1 535 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 DENND1BQ6P3S1 775 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 KLHDC10Q6PID8 442 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 ZNF852Q6ZMS4 543 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 SCML4Q8N228 414 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 ZNF276Q8N554 614 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 TTC8Q8TAM2 541 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 HSFY1Q96LI6 401 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 C8orf33Q9H7E9 229 aaPredicted RBP15.3■□□□□ 0.04
VRK3-206ENST00000594090 CNGB3Q9NQW8 809 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 CLIC5Q9NZA1 410 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 CFAP97Q9P2B7 532 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 SIT1Q9Y3P8 196 aa15.3■□□□□ 0.04
VRK3-206ENST00000594090 ZNF318Q5VUA4 2279 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 OTOL1A6NHN0 477 aaPredicted RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 F8VZ95 297 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 SPECC1L-ADORA2AF8WAN1 911 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 PIK3R2O00459 728 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 MAN2B1O00754 1011 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 MDM4O15151 490 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 GABBR2O75899 941 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 TBX18O95935 607 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 LCP1P13796 627 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 TARSP26639 723 aaKnown RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 CLCN1P35523 988 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 SYCP1Q15431 976 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 EML3Q32P44 896 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 C10orf120Q5SQS8 335 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms