RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CNR2P34972 360 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 SLC6A11P48066 632 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 KIF11P52732 1056 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 NR1H3Q13133 447 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 ARHGAP17Q68EM7 881 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 SCD5Q86SK9 330 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 C12orf40Q86WS4 652 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 DDX42Q86XP3 938 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLN3-213ENST00000565047 SFTPA1Q8IWL2 248 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 KIAA2013Q8IYS2 634 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 PHTF2Q8N3S3 785 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 TMEM176AQ96HP8 235 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 UBXN6Q9BZV1 441 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 PARD6AQ9NPB6 346 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 CIZ1Q9ULV3 898 aaPredicted RBP15.71■□□□□ 0.11
CLN3-213ENST00000565047 MYO16Q9Y6X6 1858 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 SLC9A3R1O14745 358 aaPredicted RBP15.7■□□□□ 0.1
CLN3-213ENST00000565047 CYP26A1O43174 497 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 TLR5O60602 858 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 ATG13O75143 517 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 CLSTN1O94985 981 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 ZNF394Q53GI3 561 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 SYT13Q7L8C5 426 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 ETFBKMTQ8IXQ9 262 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 ZNF276Q8N554 614 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 LMO3Q8TAP4 145 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 OTUB2Q96DC9 234 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 CEP63Q96MT8 703 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 TSG101Q99816 390 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 TLR8Q9NR97 1041 aaKnown RBP15.7■□□□□ 0.1
CLN3-213ENST00000565047 TBC1D14Q9P2M4 693 aa15.7■□□□□ 0.1
CLN3-213ENST00000565047 ARMCX3Q9UH62 379 aaPredicted RBP15.7■□□□□ 0.1
CLN3-213ENST00000565047 HOOK1Q9UJC3 728 aaKnown RBP15.7■□□□□ 0.1
CLN3-213ENST00000565047 PSMA7O14818 248 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 ACO1P21399 889 aaKnown RBP15.69■□□□□ 0.1
CLN3-213ENST00000565047 EIF2DP41214 584 aaKnown RBP15.69■□□□□ 0.1
CLN3-213ENST00000565047 CUL2Q13617 745 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 DCAF17Q5H9S7 520 aaPredicted RBP15.69■□□□□ 0.1
CLN3-213ENST00000565047 RAB41Q5JT25 222 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 HEATR6Q6AI08 1181 aaKnown RBP15.69■□□□□ 0.1
CLN3-213ENST00000565047 KLHDC10Q6PID8 442 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 HTR3DQ70Z44 454 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 CCDC186Q7Z3E2 898 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 TTC30AQ86WT1 665 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 BBS7Q8IWZ6 715 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 TTC39CQ8N584 583 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 CAMKK1Q8N5S9 505 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 CCDC150Q8NCX0 1101 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 RPLP0P6Q8NHW5 317 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 USP33Q8TEY7 942 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 RMDN1Q96DB5 314 aa15.69■□□□□ 0.1
CLN3-213ENST00000565047 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLN3-213ENST00000565047 ATG2BQ96BY7 2078 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 A0A1W2PQH9 124 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 PPP1R2P41236 205 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 PXNP49023 591 aaPredicted RBP15.68■□□□□ 0.1
CLN3-213ENST00000565047 FMO5P49326 533 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 LY6G5CQ5SRR4 150 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 TCERG1LQ5VWI1 586 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 LAIR1Q6GTX8 287 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 BHLHA9Q7RTU4 235 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 ANKRD52Q8NB46 1076 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 EXOC4Q96A65 974 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 P2RY11Q96G91 374 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 HEXIM2Q96MH2 286 aaKnown RBP15.68■□□□□ 0.1
CLN3-213ENST00000565047 MED15Q96RN5 788 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 METTL14Q9HCE5 456 aaKnown RBP15.68■□□□□ 0.1
CLN3-213ENST00000565047 DLL3Q9NYJ7 618 aa15.68■□□□□ 0.1
CLN3-213ENST00000565047 HOXC11O43248 304 aaPredicted RBP15.67■□□□□ 0.1
CLN3-213ENST00000565047 ADH5P11766 374 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 RARGP13631 454 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 ATP5C1P36542 298 aaKnown RBP15.67■□□□□ 0.1
CLN3-213ENST00000565047 KIR2DL1P43626 348 aaPredicted RBP15.67■□□□□ 0.1
CLN3-213ENST00000565047 ID4P47928 161 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 MARSP56192 900 aaKnown RBP15.67■□□□□ 0.1
CLN3-213ENST00000565047 SIM2Q14190 667 aaPredicted RBP15.67■□□□□ 0.1
CLN3-213ENST00000565047 LPAL2Q16609 132 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 PKDCCQ504Y2 493 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 Q6ZNB5 142 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 TMEM25Q86YD3 366 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 NELFBQ8WX92 580 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 JAKMIP2Q96AA8 810 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 CLIC5Q9NZA1 410 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 NCDNQ9UBB6 729 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 EBF1Q9UH73 591 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 HCN2Q9UL51 889 aa15.67■□□□□ 0.1
CLN3-213ENST00000565047 MYOFQ9NZM1 2061 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 EML5Q05BV3 1969 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 TULP2O00295 520 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 GABBR2O75899 941 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 KAT7O95251 611 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 ADH1CP00326 375 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 RETP07949 1114 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 HNRNPLP14866 589 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLN3-213ENST00000565047 TRIM21P19474 475 aaKnown RBP15.66■□□□□ 0.1
CLN3-213ENST00000565047 DMC1Q14565 340 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 PM20D1Q6GTS8 502 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 PIGZQ86VD9 579 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 TRIM59Q8IWR1 403 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 FAM160A2Q8N612 972 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms