RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 WDR87Q6ZQQ6 2873 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 BECN2A8MW95 431 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 PAEPP09466 180 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 PNMA6AP0CW24 399 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 RARGP13631 454 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 KRT5P13647 590 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 IFNAR2P48551 515 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 RGS7P49802 495 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 GCNT1Q02742 428 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 MTAPQ13126 283 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 PDGFRLQ15198 375 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 MAN2A1Q16706 1144 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 ARHGAP44Q17R89 818 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 GAB4Q2WGN9 574 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 PKDCCQ504Y2 493 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 RAB41Q5JT25 222 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 CCDC183Q5T5S1 534 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 LCLAT1Q6UWP7 414 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 BHLHA9Q7RTU4 235 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 RALGPS2Q86X27 583 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 ATOH1Q92858 354 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 TUBGCP2Q9BSJ2 902 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 OSBPL6Q9BZF3 934 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 ULBP1Q9BZM6 244 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 NDST4Q9H3R1 872 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 FAM124BQ9H5Z6 455 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 C8orf33Q9H7E9 229 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 ECT2Q9H8V3 914 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 PNPLA8Q9NP80 782 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 TLR8Q9NR97 1041 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 POLR3BQ9NW08 1133 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 SPATA6Q9NWH7 488 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 TAB2Q9NYJ8 693 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 DACH1Q9UI36 760 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 NAGPAQ9UK23 515 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 CNTN6Q9UQ52 1028 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 MRPS17Q9Y2R5 130 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 USP3Q9Y6I4 520 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 GPR179Q6PRD1 2367 aa12.2□□□□□ -0.46
CCDC88C-208ENST00000554165 RIF1Q5UIP0 2472 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 XPO1O14980 1071 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 GREM1O60565 184 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 MBD3O95983 291 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 CYP17A1P05093 508 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 PRKCSHP14314 528 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 TCF3P15923 654 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 PFKLP17858 780 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 GJA4P35212 333 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 USP8P40818 1118 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 GALK1P51570 392 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 TKTL1P51854 596 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 BCAT1P54687 386 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 ADIGQ0VDE8 80 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 MESP2Q0VG99 397 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 BST2Q10589 180 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 CNGA2Q16280 664 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 EXOC3L4Q17RC7 722 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 VWA3BQ502W6 1294 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 TCP11X2Q5H9J9 407 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 C10orf120Q5SQS8 335 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 FSTL4Q6MZW2 842 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 PMF1Q6P1K2 205 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 DENND1BQ6P3S1 775 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 PKN3Q6P5Z2 889 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 TSSK4Q6SA08 328 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 SASS6Q6UVJ0 657 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 CCDC186Q7Z3E2 898 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 C1orf210Q8IVY1 113 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 SFTPA1Q8IWL2 248 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 ADGRG2Q8IZP9 1017 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 ENOX1Q8TC92 643 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 EZH1Q92800 747 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 SECISBP2LQ93073 1101 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 NELL2Q99435 816 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 PRRX2Q99811 253 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 KLF16Q9BXK1 252 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 UBXN6Q9BZV1 441 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 DNAI2Q9GZS0 605 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 FANCLQ9NW38 375 aa12.19□□□□□ -0.46
CCDC88C-208ENST00000554165 M0QYV0 167 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 PES1O00541 588 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 LETM1O95202 739 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 ZBED1O96006 694 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 EGFP01133 1207 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 LCP1P13796 627 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 KLK7P49862 253 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 TUBP50607 506 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 PDE6CP51160 858 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 NUBP1P53384 320 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 MLLT6P55198 1093 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 KCNMA1Q12791 1236 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 KRT31Q15323 416 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 CDKAL1Q5VV42 579 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 CAVIN1Q6NZI2 390 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 RHBDF2Q6PJF5 856 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 MIB1Q86YT6 1006 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 FAM114A1Q8IWE2 563 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 BBS7Q8IWZ6 715 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms