RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CEP55Q53EZ4 464 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 NAA35Q5VZE5 725 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ALS2CLQ60I27 953 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 SMYD5Q6GMV2 418 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 NUDCD3Q8IVD9 361 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 RAPGEF4Q8WZA2 1011 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PCDHGB4Q9UN71 923 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PCDHA7Q9UN72 937 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 SNX13Q9Y5W8 968 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 NR2E3Q9Y5X4 410 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PHLPP1O60346 1717 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 LTN1O94822 1766 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ECM29Q5VYK3 1845 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PSIP1O75475 530 aaKnown RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 SNAP29O95721 258 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ECDO95905 644 aaPredicted RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CPB1P15086 417 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CCND1P24385 295 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CAP2P40123 477 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 SCNN1GP51170 649 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CASP6P55212 293 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PEX3P56589 373 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 KIF23Q02241 960 aaPredicted RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ABRQ12979 859 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 MTF1Q14872 753 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 UBE3CQ15386 1083 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 TTMPQ5BVD1 217 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 ZMYM1Q5SVZ6 1142 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CASC4Q6P4E1 433 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 RAD9BQ6WBX8 426 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CCDC36Q8IYA8 594 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 RIBC1Q8N443 379 aaPredicted RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 BTBD6Q96KE9 485 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 EXOC2Q96KP1 924 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 CDH19Q9H159 772 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 SARS2Q9NP81 518 aaKnown RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 POLE3Q9NRF9 147 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 IARS2Q9NSE4 1012 aaKnown RBP9.21□□□□□ -0.94
VPS13D-212ENST00000543766 PANK4Q9NVE7 773 aa9.21□□□□□ -0.94
VPS13D-212ENST00000543766 MED23Q9ULK4 1368 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 LDLRAD4O15165 306 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RNF224P0DH78 156 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ZBTB48P10074 688 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ESRRAP11474 423 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 NR4A1P22736 598 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ADH7P40394 386 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CRKLP46109 303 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SCTRP47872 440 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RGS19P49795 217 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SSRP1Q08945 709 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 STX5Q13190 355 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ATP1A4Q13733 1029 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RASGRF1Q13972 1273 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 TAF5Q15542 800 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SMTNL2Q2TAL5 461 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CDKL4Q5MAI5 379 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 KANK2Q63ZY3 851 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 TRAPPC11Q7Z392 1133 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 MYCT1Q8N699 235 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 GLB1L3Q8NCI6 653 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 DTD1Q8TEA8 209 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 EPN3Q9H201 632 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 PHAXQ9H814 394 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ZNF112Q9UJU3 913 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ZHX2Q9Y6X8 837 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 FAM237AA0A1B0GTK4 181 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 H7C1Q1 480 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 BTN3A1O00481 513 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 TOMM70O94826 608 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 IFI30P13284 250 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RPL35P42766 123 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 GNG10P50151 68 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RAP1GDS1P52306 607 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 C16orf72Q14CZ0 275 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 KARSQ15046 597 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ABCB5Q2M3G0 1257 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SPRED3Q2MJR0 410 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 TMEM259Q4ZIN3 620 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 STRIP1Q5VSL9 837 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CCNI2Q6ZMN8 369 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 PIK3AP1Q6ZUJ8 805 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CNTROBQ8N137 903 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CPA6Q8N4T0 437 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 DDX17Q92841 729 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 CRELD1Q96HD1 420 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ART5Q96L15 291 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ZNF408Q9H9D4 720 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SP110Q9HB58 689 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 SNX9Q9Y5X1 595 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 ALS2Q96Q42 1657 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 NFAT5O94916 1531 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 A8MU76 341 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 C2orf74A8MZ97 194 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 COPS2P61201 443 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 DSC1Q08554 894 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 GALNT3Q14435 633 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 MORF4L2Q15014 288 aa9.2□□□□□ -0.94
VPS13D-212ENST00000543766 R3HDM1Q15032 1099 aaKnown RBP9.2□□□□□ -0.94
VPS13D-212ENST00000543766 RPS26P11Q5JNZ5 115 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms