RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 SIT1Q9Y3P8 196 aa9.72□□□□□ -0.85
SNHG1-215ENST00000540904 WNT6Q9Y6F9 365 aa9.72□□□□□ -0.85
SNHG1-215ENST00000540904 PTPRDP23468 1912 aa9.72□□□□□ -0.85
SNHG1-215ENST00000540904 FAM170BA6NMN3 283 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SMTNL1A8MU46 457 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 BECN2A8MW95 431 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 PIK3R2O00459 728 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SCAMP3O14828 347 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 THAP12O43422 761 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 MED7O43513 233 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ZBED1O96006 694 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 PNMA6AP0CW24 399 aaPredicted RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 RARGP13631 454 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ARSAP15289 507 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ZNF18P17022 549 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 GNA15P30679 374 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 PLA2G4AP47712 749 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 RGS7P49802 495 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ZNF165P49910 485 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 TUBP50607 506 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 COPB1P53618 953 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ADIGQ0VDE8 80 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 KCNMA1Q12791 1236 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 RAPGEF1Q13905 1077 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ITPRIPL2Q3MIP1 535 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 RAB41Q5JT25 222 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 KLHDC7AQ5VTJ3 777 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SCD5Q86SK9 330 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 DHX40Q8IX18 779 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SIX6OS1Q8N1H7 587 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SLC35F5Q8WV83 523 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 OSCP1Q8WVF1 389 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 FAM3CQ92520 227 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 SHC3Q92529 594 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 NDRG1Q92597 394 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 FAM83CQ9BQN1 747 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 BPIFA3Q9BQP9 254 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 DDX23Q9BUQ8 820 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 ULBP1Q9BZM6 244 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 HSD3B7Q9H2F3 369 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 NMUR1Q9HB89 426 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 LTB4R2Q9NPC1 389 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 CFAP97Q9P2B7 532 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 LIMA1Q9UHB6 759 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 NUDT5Q9UKK9 219 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 NDRG2Q9UN36 371 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 MRPS17Q9Y2R5 130 aaKnown RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 MTF2Q9Y483 593 aaPredicted RBP9.71□□□□□ -0.86
SNHG1-215ENST00000540904 FHOD1Q9Y613 1164 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 USP3Q9Y6I4 520 aa9.71□□□□□ -0.86
SNHG1-215ENST00000540904 OTOL1A6NHN0 477 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 SHISA7A6NL88 538 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 LGALS16A8MUM7 142 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 SPECC1L-ADORA2AF8WAN1 911 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 FOXN3O00409 490 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 MAN2B1O00754 1011 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 IRF1P10914 325 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 RALAP11233 206 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ATP1A3P13637 1013 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 LCP1P13796 627 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 GLULP15104 373 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 UCHL3P15374 230 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 TCF3P15923 654 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 TARSP26639 723 aaKnown RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 CTHP32929 405 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ATP5C1P36542 298 aaKnown RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 IFNAR2P48551 515 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 PSEN1P49768 467 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 KLK7P49862 253 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 YWHAGP61981 247 aaKnown RBP eCLIP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 UBXN1Q04323 297 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 PTK2Q05397 1052 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 RUNX3Q13761 415 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 DRAP1Q14919 205 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 PDGFRLQ15198 375 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 SKOR2Q2VWA4 1001 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 C10orf120Q5SQS8 335 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 DPY19L2P1Q6NXN4 242 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 PMF1Q6P1K2 205 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 DENND1BQ6P3S1 775 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 DDX42Q86XP3 938 aaKnown RBP eCLIP9.7□□□□□ -0.867e-6■■■□□ 16.5
SNHG1-215ENST00000540904 CCDC105Q8IYK2 499 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ARHGAP18Q8N392 663 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ZNF606Q8WXB4 792 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 KCTD13Q8WZ19 329 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ATP2A3Q93084 1043 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 ZFRQ96KR1 1074 aaKnown RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 PCMTD1Q96MG8 357 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 FUCA2Q9BTY2 467 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 LINC00597Q9H2U6 94 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 C8orf33Q9H7E9 229 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 CYLDQ9NQC7 956 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 HPS4Q9NQG7 708 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 FAM207AQ9NSI2 230 aaPredicted RBP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.7□□□□□ -0.86
SNHG1-215ENST00000540904 COL4A3Q01955 1670 aa9.7□□□□□ -0.86
SNHG1-215ENST00000540904 LRRC10BA6NIK2 292 aa9.69□□□□□ -0.86
SNHG1-215ENST00000540904 SLC9A3R1O14745 358 aaPredicted RBP9.69□□□□□ -0.86
SNHG1-215ENST00000540904 MDM4O15151 490 aa9.69□□□□□ -0.86
SNHG1-215ENST00000540904 MLLT6P55198 1093 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms