RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ETFBKMTQ8IXQ9 262 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 EID2Q8N6I1 236 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 EXD3Q8N9H8 876 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 C1orf216Q8TAB5 229 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 CEP295NLQ96MC4 621 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 POLR1BQ9H9Y6 1135 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 PTPN13Q12923 2485 aa9.81□□□□□ -0.84
USP28-205ENST00000537706 BLACEA4D250 179 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 LACTBL1A8MY62 500 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 TRIM66O15016 1216 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ABL1P00519 1130 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 CYP2F1P24903 491 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 NPTX2P47972 431 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ARRB1P49407 418 aaPredicted RBP9.8□□□□□ -0.84
USP28-205ENST00000537706 GUCY2FP51841 1108 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 SV2CQ496J9 727 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 HS1BP3Q53T59 392 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 CATSPER3Q86XQ3 398 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 UCMAQ8WVF2 138 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 FAM212AQ96EL1 285 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 PSMG3-AS1Q96PY0 264 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 PHF12Q96QT6 1004 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ACOX2Q99424 681 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ELF4Q99607 663 aaPredicted RBP9.8□□□□□ -0.84
USP28-205ENST00000537706 CD248Q9HCU0 757 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 BRMS1Q9HCU9 246 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 SPHK2Q9NRA0 654 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ABLIM1O14639 778 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 PPEF2O14830 753 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 NEMFO60524 1076 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 MPOP05164 745 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 MUTP22033 750 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 CD27P26842 260 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 BCAT1P54687 386 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 CCT2P78371 535 aaKnown RBP9.8□□□□□ -0.84
USP28-205ENST00000537706 INSM1Q01101 510 aaPredicted RBP9.8□□□□□ -0.84
USP28-205ENST00000537706 GRIN1Q05586 938 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 MCL1Q07820 350 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 PDIA5Q14554 519 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 FUT11Q495W5 492 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 MIB1Q86YT6 1006 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 TMPRSS6Q8IU80 811 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 BICD1Q96G01 975 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 FUBP3Q96I24 572 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP28-205ENST00000537706 ZBTB45Q96K62 511 aaPredicted RBP9.8□□□□□ -0.84
USP28-205ENST00000537706 ZNF560Q96MR9 790 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 SEMA3CQ99985 751 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 ARHGAP28Q9P2N2 729 aa9.8□□□□□ -0.84
USP28-205ENST00000537706 CFAP46Q8IYW2 2715 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 PIEZO2Q9H5I5 2752 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 CBX4O00257 560 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 SCAMP3O14828 347 aaKnown RBP9.79□□□□□ -0.84
USP28-205ENST00000537706 IGLV3-19P01714 112 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ITGB2P05107 769 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 SPATA31C1P0DKV0 1188 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 GRIK1P39086 918 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ST3GAL1Q11201 340 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 TMEM132DQ14C87 1099 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ZSCAN23Q3MJ62 389 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ZPBP2Q6X784 338 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 C4orf50Q6ZRC1 276 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 USP53Q70EK8 1073 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ACBD6Q9BR61 282 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP28-205ENST00000537706 C17orf75Q9HAS0 396 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 TMLHEQ9NVH6 421 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 HSPBP1Q9NZL4 362 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 WDR35Q9P2L0 1181 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 DERAQ9Y315 318 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 STON1Q9Y6Q2 735 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 ANK1P16157 1881 aa9.79□□□□□ -0.84
USP28-205ENST00000537706 KCNJ18B7U540 433 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 PIRO00625 290 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 FSBPO95073 299 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 GJB6O95452 261 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 SMTNP53814 917 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 NPY5RQ15761 445 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 TSGA10IPQ3SY00 556 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 INTS6LQ5JSJ4 861 aaKnown RBP9.78□□□□□ -0.84
USP28-205ENST00000537706 HAUS3Q68CZ6 603 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 FAM124AQ86V42 546 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 CCDC83Q8IWF9 413 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 OXR1Q8N573 874 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 SPATA17Q96L03 361 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 BACH2Q9BYV9 841 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 CCSER1Q9C0I3 900 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.78□□□□□ -0.847e-6■■■■■ 74.5
USP28-205ENST00000537706 GDF3Q9NR23 364 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 WDR70Q9NW82 654 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 KCNJ14Q9UNX9 436 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.78□□□□□ -0.84
USP28-205ENST00000537706 MYO9AB2RTY4 2548 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 H0YCG3 227 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 VILLO15195 856 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 USP12O75317 370 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 MED24O75448 989 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 MAGEA11P43364 429 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 DGKGP49619 791 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 RACK1P63244 317 aaKnown RBP9.78□□□□□ -0.84
USP28-205ENST00000537706 ZXDBP98169 803 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms