RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ANKS1BQ7Z6G8 1248 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 FAM35AQ86V20 835 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 ZDHHC17Q8IUH5 632 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 CCDC105Q8IYK2 499 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 NIPA2Q8N8Q9 360 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 MAIP1Q8WWC4 291 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 PIK3R5Q8WYR1 880 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 RUNDC3BQ96NL0 473 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 TMEM209Q96SK2 561 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 HEMGNQ9BXL5 484 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 CHST7Q9NS84 486 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 VPS18Q9P253 973 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 RASAL2Q9UJF2 1139 aa19.78■□□□□ 0.76
VPS28-207ENST00000526977 TULP2O00295 520 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 HSF2BPO75031 334 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 AP1G2O75843 785 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 SOD2P04179 222 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 SMARCB1Q12824 385 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 LRRC38Q5VT99 294 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 KIAA1841Q6NSI8 718 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 CLEC20AQ6ZU45 233 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 TAS1R1Q7RTX1 841 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 CCDC50Q8IVM0 306 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 JOSD2Q8TAC2 188 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 CLP1Q92989 425 aaKnown RBP19.77■□□□□ 0.76
VPS28-207ENST00000526977 KRT82Q9NSB4 513 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 SNX24Q9Y343 169 aa19.77■□□□□ 0.76
VPS28-207ENST00000526977 E5RJQ4 531 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 TLL1O43897 1013 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 TBC1D4O60343 1298 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 GJC1P36383 396 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 RGS7P49802 495 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 KLF1Q13351 362 aaPredicted RBP19.76■□□□□ 0.75
VPS28-207ENST00000526977 DDX53Q86TM3 631 aaKnown RBP19.76■□□□□ 0.75
VPS28-207ENST00000526977 SPATA2LQ8IUW3 424 aaPredicted RBP19.76■□□□□ 0.75
VPS28-207ENST00000526977 RCOR2Q8IZ40 523 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 SP7Q8TDD2 431 aaPredicted RBP19.76■□□□□ 0.75
VPS28-207ENST00000526977 KCTD13Q8WZ19 329 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 MCRS1Q96EZ8 462 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 FUBP3Q96I24 572 aaKnown RBP eCLIP19.76■□□□□ 0.75
VPS28-207ENST00000526977 B3GALT6Q96L58 329 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 ZIM3Q96PE6 472 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 OSBPL8Q9BZF1 889 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 CSNK1G1Q9HCP0 422 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 TMLHEQ9NVH6 421 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 KRT17Q04695 432 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 SLC39A12Q504Y0 691 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 CFAP58Q5T655 872 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 PIGZQ86VD9 579 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 RNF25Q96BH1 459 aaPredicted RBP19.76■□□□□ 0.75
VPS28-207ENST00000526977 SH3GL2Q99962 352 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 ZDHHC18Q9NUE0 388 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 ADAM21Q9UKJ8 722 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 BACE2Q9Y5Z0 518 aa19.76■□□□□ 0.75
VPS28-207ENST00000526977 RNF40O75150 1001 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 MAP3K7CLP57077 242 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 DMTNQ08495 405 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 SNX1Q13596 522 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 TXNRD3NBQ6F5E7 133 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 ARFGAP1Q8N6T3 406 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 R3HDM2Q9Y2K5 976 aaKnown RBP19.75■□□□□ 0.75
VPS28-207ENST00000526977 BEST1O76090 585 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 BDNFP23560 247 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 PSMA2P25787 234 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 RPL21P46778 160 aaKnown RBP19.75■□□□□ 0.75
VPS28-207ENST00000526977 OR6B2Q6IFH4 312 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 FNIP1Q8TF40 1166 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 ATG4AQ8WYN0 398 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 SLCO2A1Q92959 643 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 LRRC45Q96CN5 670 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 SMOQ99835 787 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 VN1R3Q9BXE9 311 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 DCLK3Q9C098 648 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 PNPLA8Q9NP80 782 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 GRHL1Q9NZI5 618 aa19.75■□□□□ 0.75
VPS28-207ENST00000526977 PTPRSQ13332 1948 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 PI4K2BG5E9Z4 385 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 OR4Q2P0C623 313 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 GPR17Q13304 367 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 ZDHHC24Q6UX98 284 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 SCUBE3Q8IX30 993 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 HERC2P3Q9BVR0 1158 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 LRRC4Q9HBW1 653 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 DMAP1Q9NPF5 467 aaPredicted RBP19.74■□□□□ 0.75
VPS28-207ENST00000526977 METTL5Q9NRN9 209 aaKnown RBP19.74■□□□□ 0.75
VPS28-207ENST00000526977 KLHL11Q9NVR0 708 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 MTRRQ9UBK8 725 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 PCDHB5Q9Y5E4 795 aa19.74■□□□□ 0.75
VPS28-207ENST00000526977 OPA1O60313 960 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 LINC00271P0C7V0 271 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 HSD17B3P37058 310 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 SCNN1AP37088 669 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 SLC6A3Q01959 620 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 DSG1Q02413 1049 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 SLC8B1Q6J4K2 584 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 VSTM1Q6UX27 236 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 GPR65Q8IYL9 337 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 EMC1Q8N766 993 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 C2orf15Q8WU43 125 aaKnown RBP19.73■□□□□ 0.75
VPS28-207ENST00000526977 RBM41Q96IZ5 413 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms