RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ABLIM3O94929 683 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 VNN1O95497 513 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 RHOP08100 348 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ATF2P15336 505 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ANK1P16157 1881 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 PTPN2P17706 415 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 SLC9A1P19634 815 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 PON1P27169 355 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 CDC25BP30305 580 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 MAGEA9P43362 315 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 KLK7P49862 253 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 MYO1EQ12965 1108 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ZBTB6Q15916 424 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 RSPO4Q2I0M5 234 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-210ENST00000493727 C9orf57Q5W0N0 161 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF280DQ6N043 979 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 TCEAL8Q8IYN2 117 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 SPC24Q8NBT2 197 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ITFG1Q8TB96 612 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 NELL1Q92832 810 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 PI4K2AQ9BTU6 479 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 OXCT2Q9BYC2 517 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-210ENST00000493727 OSBPL6Q9BZF3 934 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 HCFC1R1Q9NWW0 138 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 FBXO4Q9UKT5 387 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 SIK3Q9Y2K2 1263 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.92□□□□□ -0.343e-6■■■■■ 31.9
UPF3A-210ENST00000493727 ITIH6Q6UXX5 1313 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 WDR27A2RRH5 827 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 TBC1D4O60343 1298 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 ECI2O75521 394 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 MICAL2O94851 1124 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 P4HA1P13674 534 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 ATICP31939 592 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 PBX1P40424 430 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 PNPLA4P41247 253 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 MYL6P60660 151 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 NOP14P78316 857 aaKnown RBP12.91□□□□□ -0.34
UPF3A-210ENST00000493727 KCNMA1Q12791 1236 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 TRIM14Q14142 442 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 MRPL58Q14197 206 aaKnown RBP12.91□□□□□ -0.34
UPF3A-210ENST00000493727 MLF2Q15773 248 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-210ENST00000493727 SGSM1Q2NKQ1 1148 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 CTXN3Q4LDR2 81 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 TRIM65Q6PJ69 517 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 CACNA2D4Q7Z3S7 1137 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 TMEM130Q8N3G9 435 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 PPM1KQ8N3J5 372 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 LEMD2Q8NC56 503 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 ZBTB44Q8NCP5 570 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 SEMA4DQ92854 862 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 GTPBP3Q969Y2 492 aaKnown RBP12.91□□□□□ -0.34
UPF3A-210ENST00000493727 IQCDQ96DY2 449 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 HPDLQ96IR7 371 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 CNTNAP3BQ96NU0 1288 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 NUP58Q9BVL2 599 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 CNTNAP3Q9BZ76 1288 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 PLCB1Q9NQ66 1216 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 SIX4Q9UIU6 781 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 FBXL5Q9UKA1 691 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 COQ4Q9Y3A0 265 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 MTF2Q9Y483 593 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-210ENST00000493727 PCDHGA2Q9Y5H1 932 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 COL4A2P08572 1712 aa12.91□□□□□ -0.34
UPF3A-210ENST00000493727 WIPF1O43516 503 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 LILRB5O75023 590 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 CST3P01034 146 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-210ENST00000493727 PTMAP06454 111 aaKnown RBP12.9□□□□□ -0.34
UPF3A-210ENST00000493727 PAX3P23760 479 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 IGFBP6P24592 240 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-210ENST00000493727 LRPAP1P30533 357 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 TAF6P49848 677 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 ARPP19P56211 112 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 TNNC1P63316 161 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 SV2CQ496J9 727 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 SLC44A4Q53GD3 710 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF667Q5HYK9 610 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 IQCEQ6IPM2 695 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 SPOPLQ6IQ16 392 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 SCARA5Q6ZMJ2 495 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 LRRC52Q8N7C0 313 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 TAF4BQ92750 862 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 NELL2Q99435 816 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 KXD1Q9BQD3 176 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 BCO2Q9BYV7 579 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 EPC1Q9H2F5 836 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 CYP4F11Q9HBI6 524 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 LTB4R2Q9NPC1 389 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 APEX2Q9UBZ4 518 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 AFF4Q9UHB7 1163 aaKnown RBP12.9□□□□□ -0.34
UPF3A-210ENST00000493727 INSL5Q9Y5Q6 135 aa12.9□□□□□ -0.34
UPF3A-210ENST00000493727 CHD6Q8TD26 2715 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 A0A1W2PNR3 127 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 SHISA7A6NL88 538 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 PPEF2O14830 753 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 NCAM2O15394 837 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 LAMTOR5O43504 91 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 PRMT3O60678 531 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 KRT37O76014 449 aa12.89□□□□□ -0.35
UPF3A-210ENST00000493727 ASS1P00966 412 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms