RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 KLHL11Q9NVR0 708 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 RCOR3Q9P2K3 495 aaPredicted RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 TRPV2Q9Y5S1 764 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 SQORQ9Y6N5 450 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 COL4A4P53420 1690 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 A0A087WUV0 522 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 BCLAF3A2AJT9 711 aaKnown RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 A8MXQ7 604 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 SOX1O00570 391 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 NDUFAB1O14561 156 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 PTGESO14684 152 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 ZNF189O75820 626 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 FAM155BO75949 473 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 CD48P09326 243 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 CST5P28325 142 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 SDC4P31431 198 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 RPL9P32969 192 aaKnown RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 GJC1P36383 396 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 IFI35P80217 286 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 SOX4Q06945 474 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 MGAT3Q09327 533 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 GPS1Q13098 491 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 XRCC4Q13426 336 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 TRIP13Q15645 432 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 LRIT3Q3SXY7 679 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 KCNT1Q5JUK3 1230 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 UBAP2Q5T6F2 1119 aaKnown RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 KAZNQ674X7 775 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 RSPH3Q86UC2 560 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 SERINC5Q86VE9 423 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 EXOC3L1Q86VI1 746 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 HACE1Q8IYU2 909 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 TDHQ8IZJ6 230 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 GLIS1Q8NBF1 620 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 EPS8L3Q8TE67 593 aaKnown RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 MAML1Q92585 1016 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 ZNF317Q96PQ6 595 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 UBE2OQ9C0C9 1292 aaKnown RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 SENP6Q9GZR1 1112 aaPredicted RBP11.21□□□□□ -0.61
USP4-214ENST00000491791 SNX25Q9H3E2 840 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 CENPHQ9H3R5 247 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 USP29Q9HBJ7 922 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 SENP1Q9P0U3 644 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 BCCIPQ9P287 314 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP4-214ENST00000491791 SLC24A2Q9UI40 661 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 HES2Q9Y543 173 aa11.21□□□□□ -0.61
USP4-214ENST00000491791 MCF2LO15068 1137 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 INPPL1O15357 1258 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 HUS1O60921 280 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PECAM1P16284 738 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 ZFXP17010 805 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 SYN1P17600 705 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 AKAP5P24588 427 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 RPL22P35268 128 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 MAGEA10P43363 369 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 NR2C2P49116 596 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 HDAC4P56524 1084 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 CORO7P57737 925 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 EIF3EP60228 445 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 ZNF200P98182 395 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 BEX3Q00994 111 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PLCB3Q01970 1234 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 CACNB2Q08289 660 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 ANKRD20A8PQ5CZ79 823 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 ZFYVE27Q5T4F4 411 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 MFSD14CQ5VZR4 134 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 FAM43BQ6ZT52 329 aaPredicted RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 MICALCLQ6ZW33 695 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 CENPUQ71F23 418 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 TADA2BQ86TJ2 420 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 CCDC25Q86WR0 208 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 DEFB123Q8N688 67 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PQLC3Q8N755 202 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PLD5Q8N7P1 536 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 ARRDC4Q8NCT1 418 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 GSTCDQ8NEC7 633 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 OR6B3Q8NGW1 331 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 ZNF473Q8WTR7 871 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 CPT1BQ92523 772 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PIWIL1Q96J94 861 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 TMEM121Q9BTD3 319 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 DUSP16Q9BY84 665 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 PCDH18Q9HCL0 1135 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 SSU72Q9NP77 194 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP4-214ENST00000491791 PCSK1NQ9UHG2 260 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 RSPH14Q9UHP6 348 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 GIT1Q9Y2X7 761 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 RRP15Q9Y3B9 282 aaKnown RBP11.2□□□□□ -0.62
USP4-214ENST00000491791 A0A0C4DFX4 3053 aa11.2□□□□□ -0.62
USP4-214ENST00000491791 SF3B1O75533 1304 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP4-214ENST00000491791 TLDC2A0PJX2 215 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 C9IYK1 514 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 M0QZ92 97 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 SGK1O00141 431 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 CHADO15335 359 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 SEPT4O43236 478 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 ADAMTS4O75173 837 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 DAB1O75553 588 aa11.19□□□□□ -0.62
USP4-214ENST00000491791 ACSL3O95573 720 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms