RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 AMACRQ9UHK6 382 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PCDHA4Q9UN74 947 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 RUVBL2Q9Y230 463 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 USP6P35125 1406 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 A0A0G2JPF8 293 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 LINC00854A0A1B0GVQ3 168 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 FAM92AA1XBS5 289 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 GTPBP10A4D1E9 387 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 HNRNPCL3B7ZW38 293 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 MEIS1O00470 390 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 FCHO1O14526 889 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 CD3EAPO15446 510 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 ZNF862O60290 1169 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PRMT3O60678 531 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 SEMA3DO95025 777 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ECDO95905 644 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 HNRNPCL4P0DMR1 293 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PTPN2P17706 415 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PAMP19021 973 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 TGM2P21980 687 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 AKAP5P24588 427 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 NUP62P37198 522 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 HNF4AP41235 474 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 SLC1A4P43007 532 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 MAGEA4P43358 317 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 QARSP47897 775 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 GDI2P50395 445 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 FXR1P51114 621 aaKnown RBP eCLIP2.28□□□□□ -2.05
USP53-202ENST00000450251 AP3S2P59780 193 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 CSNK2BP67870 215 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 TRIM32Q13049 653 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 EFR3AQ14156 821 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 MESDQ14696 234 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 MAPRE1Q15691 268 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 RBM48Q5RL73 367 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 CCNJQ5T5M9 372 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 USPL1Q5W0Q7 1092 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PDPK2PQ6A1A2 396 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 SDE2Q6IQ49 451 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PPP1R18Q6NYC8 613 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ZCCHC8Q6NZY4 707 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 DUS1LQ6P1R4 473 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 LINC00299Q6ZSB3 139 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ZBTB49Q6ZSB9 765 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 FRMD7Q6ZUT3 714 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 KIF18BQ86Y91 864 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PDSS2Q86YH6 399 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 CREG2Q8IUH2 290 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 CDKL3Q8IVW4 592 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 MAPKAPK5Q8IW41 473 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 RHOT1Q8IXI2 618 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 GRAMD1CQ8IYS0 662 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 RCOR2Q8IZ40 523 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ELMOD2Q8IZ81 293 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 C8orf59Q8N0T1 100 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 MPP5Q8N3R9 675 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 DHRSXQ8N5I4 330 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 MYDGFQ969H8 173 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 VPS33AQ96AX1 596 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 BBS4Q96RK4 519 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 SPOCK3Q9BQ16 436 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 RTKNQ9BST9 563 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 GTPBP2Q9BX10 602 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 RNF38Q9H0F5 515 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 DHX33Q9H6R0 707 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 HPS4Q9NQG7 708 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ZNF277Q9NRM2 450 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 GINM1Q9NU53 330 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 ETNK2Q9NVF9 386 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 WDR70Q9NW82 654 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 CDKN2AIPQ9NXV6 580 aaPredicted RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 MOSPD1Q9UJG1 213 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PLAGL2Q9UPG8 496 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 TDRKHQ9Y2W6 561 aaKnown RBP2.28□□□□□ -2.05
USP53-202ENST00000450251 KCNE2Q9Y6J6 123 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 PNPLA6Q8IY17 1366 aa2.28□□□□□ -2.05
USP53-202ENST00000450251 SF3B1O75533 1304 aaKnown RBP eCLIP2.27□□□□□ -2.051e-8■■■■■ 103.4
USP53-202ENST00000450251 NRKQ7Z2Y5 1582 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 A0A0D9SFI3 127 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 TRIM38O00635 465 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 MAGEB3O15480 346 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 PSMD3O43242 534 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 TEX33O43247 280 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 CCNT1O60563 726 aaKnown RBP2.27□□□□□ -2.05
USP53-202ENST00000450251 TRIM13O60858 407 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 VPS4BO75351 444 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 POLR2MP0CAP2 368 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 ME2P23368 584 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 RCVRNP35243 200 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 MAGEA10P43363 369 aaPredicted RBP2.27□□□□□ -2.05
USP53-202ENST00000450251 NME5P56597 212 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 KCNQ4P56696 695 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 MYL6P60660 151 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 SRP54P61011 504 aaKnown RBP2.27□□□□□ -2.05
USP53-202ENST00000450251 SNRPFP62306 86 aaKnown RBP2.27□□□□□ -2.05
USP53-202ENST00000450251 OTUD4Q01804 1114 aaKnown RBP2.27□□□□□ -2.05
USP53-202ENST00000450251 CYP27A1Q02318 531 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 GSTM4Q03013 218 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 RELAQ04206 551 aa2.27□□□□□ -2.05
USP53-202ENST00000450251 SF3A3Q12874 501 aaKnown RBP eCLIP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms