RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 USP49Q70CQ1 688 aa7.29□□□□□ -1.24
SMC1A-201ENST00000322213 IMPAD1Q9NX62 359 aa7.29□□□□□ -1.24
SMC1A-201ENST00000322213 SLC8A2Q9UPR5 921 aa7.29□□□□□ -1.24
SMC1A-201ENST00000322213 NMT2O60551 498 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 IGKV5-2P06315 115 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 LIN52Q52LA3 116 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SATL1Q86VE3 508 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TCP10LQ8TDR4 215 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CDHR1Q96JP9 859 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CCDC17Q96LX7 622 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 EIF2AK1Q9BQI3 630 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ASMTLO95671 621 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 IDO1P14902 403 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 COG2Q14746 738 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 UBE2SQ16763 222 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CENPPQ6IPU0 288 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CAMK1DQ8IU85 385 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 LXNQ9BS40 222 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 LRRC10BA6NIK2 292 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 VCLP18206 1134 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 IREB2P48200 963 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PTK6Q13882 451 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 RYBPQ8N488 228 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SAMD3Q8N6K7 520 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PPHLN1Q8NEY8 458 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 REEP2Q9BRK0 252 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 RUBCNLQ9H714 662 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 GTF3C4Q9UKN8 822 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SYNPO2Q9UMS6 1093 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 BTBD3Q9Y2F9 522 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MED12LQ86YW9 2145 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TRIM13O60858 407 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 VDRP11473 427 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NFX1Q12986 1120 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ACAP1Q15027 740 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 DDR2Q16832 855 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TMEM53Q6P2H8 277 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 KLHL17Q6TDP4 642 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ATP8B3O60423 1300 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ARPC4-TTLL3A0A0A6YYG9 625 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 E9PBE3 544 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MYL4P12829 197 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ITGA4P13612 1032 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 GRIK1P39086 918 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SCARA5Q6ZMJ2 495 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 THNSL1Q8IYQ7 743 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SRBD1Q8N5C6 995 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MCPH1Q8NEM0 835 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 KCTD14Q9BQ13 255 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ADAM33Q9BZ11 813 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MYO1GB0I1T2 1018 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 KCNK10P57789 538 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 EPS8Q12929 822 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NCF4Q15080 339 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 FAM102AQ5T9C2 384 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SYDE2Q5VT97 1194 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 AAGABQ6PD74 315 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 EFL1Q7Z2Z2 1120 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 FAM71DQ8N9W8 422 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 UBASH3BQ8TF42 649 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SHCBP1LQ9BZQ2 653 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NGRNQ9NPE2 291 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ZSCAN9O15535 394 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TSC22D2O75157 780 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PORP16435 677 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 HK2P52789 917 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MRPS22P82650 360 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CTTNQ14247 550 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 SNRNP35Q16560 246 aaKnown RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ABCB5Q2M3G0 1257 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TJAP1Q5JTD0 557 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 FBXO36Q8NEA4 188 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 MTERF3Q96E29 417 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 OTUB1Q96FW1 271 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 KANSL2Q9H9L4 492 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 IL1RL2Q9HB29 575 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PCDH9Q9HC56 1237 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TMEM8AQ9HCN3 771 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TMEM2Q9UHN6 1383 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NCANO14594 1321 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 CLUHO75153 1309 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NPHP3-ACAD11A0A0J9YXS1 232 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 LOC100653049A0A140TA62 436 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 GSG1L2A8MUP6 293 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 KRT34O76011 436 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 GJB6O95452 261 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PROCP04070 461 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 RECQLP46063 649 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TRAF3Q13114 568 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 TRIP4Q15650 581 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-201ENST00000322213 PADI6Q6TGC4 694 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 FBXW8Q8N3Y1 598 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 DAGLBQ8NCG7 672 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 NAT9Q9BTE0 207 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ARHGEF3Q9NR81 526 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 GIN1Q9NXP7 522 aa7.28□□□□□ -1.24
SMC1A-201ENST00000322213 ERBB3P21860 1342 aa7.27□□□□□ -1.24
SMC1A-201ENST00000322213 EFCAB14O75071 495 aa7.27□□□□□ -1.24
SMC1A-201ENST00000322213 USP17L8P0C7I0 530 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms