RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ATP8B3O60423 1300 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 A6NHS1 94 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 AIM2O14862 343 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 TNNC2P02585 160 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 EDN1P05305 212 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 HIC1Q14526 733 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 DUOXA2Q1HG44 320 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 Q3C1V9 767 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 PCGF5Q86SE9 256 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 DCAKDQ8WVC6 231 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 CLMNQ96JQ2 1002 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 DHX35Q9H5Z1 703 aaKnown RBP12.44□□□□□ -0.42
USHBP1-201ENST00000252597 HMGXB4Q9UGU5 601 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 EGFRP00533 1210 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 SNRPAP09012 282 aaKnown RBP12.44□□□□□ -0.42
USHBP1-201ENST00000252597 CXCL8P10145 99 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 ANPEPP15144 967 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 OSBPP22059 807 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 GSTT1P30711 240 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 HSD17B4P51659 736 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 PGGT1BP53609 377 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF667Q5HYK9 610 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 SAMD7Q7Z3H4 446 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 PHF13Q86YI8 300 aaPredicted RBP12.44□□□□□ -0.42
USHBP1-201ENST00000252597 ULK2Q8IYT8 1036 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 WDR83Q9BRX9 315 aaKnown RBP12.44□□□□□ -0.42
USHBP1-201ENST00000252597 NIF3L1Q9GZT8 377 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 NRXN2Q9P2S2 1712 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ARFGEF1Q9Y6D6 1849 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 PDE4DIPQ5VU43 2346 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 GOLGA8TH3BQL2 631 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 B4GALT5O43286 388 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 HMGCRP04035 888 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ACADSP16219 412 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 DPEP1P16444 411 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 DEUP1Q05D60 604 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 B3GNT9Q6UX72 402 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 NME8Q8N427 588 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 C12orf29Q8N999 325 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 NSUN6Q8TEA1 469 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 GCNAQ96QF7 691 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 WWP1Q9H0M0 922 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 SAR1AQ9NR31 198 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 DDX18Q9NVP1 670 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 SLC7A8Q9UHI5 535 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MYO18AQ92614 2054 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 SCN9AQ15858 1988 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MYOCOSA0A1B0GUC4 107 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 NOP56O00567 594 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 USP12O75317 370 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 NELFEP18615 380 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MUTP22033 750 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 SOX11P35716 441 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 DSG1Q02413 1049 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MMEL1Q495T6 779 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ATG16L1Q676U5 607 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 IRGCQ6NXR0 463 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ADGRD1Q6QNK2 874 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 RAPH1Q70E73 1250 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 TNS4Q8IZW8 715 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MPP5Q8N3R9 675 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 KCTD17Q8N5Z5 321 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ADAM32Q8TC27 787 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 PPP4R1Q8TF05 950 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 UPF1Q92900 1129 aaKnown RBP eCLIP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 ABTB1Q969K4 478 aaPredicted RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 PIWIL1Q96J94 861 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 EBF3Q9H4W6 596 aa12.43□□□□□ -0.42
USHBP1-201ENST00000252597 DDX56Q9NY93 547 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 APOBEC2Q9Y235 224 aaKnown RBP12.43□□□□□ -0.42
USHBP1-201ENST00000252597 MAGEA13PA6NCF6 341 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SMAPO00193 183 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 WFS1O76024 890 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 ITGB3P05106 788 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 ITGAVP06756 1048 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 CCNFP41002 786 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 XKR3Q5GH77 459 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 PPM1JQ5JR12 505 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 CIAPIN1Q6FI81 312 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 IYDQ6PHW0 289 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 PTAR1Q7Z6K3 402 aaPredicted RBP12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SESTD1Q86VW0 696 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SLC26A11Q86WA9 606 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 WDR75Q8IWA0 830 aaKnown RBP12.42□□□□□ -0.42
USHBP1-201ENST00000252597 TMEM192Q8IY95 271 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 RXFP2Q8WXD0 754 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 FAM149B1Q96BN6 582 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 DNAJC1Q96KC8 554 aaKnown RBP12.42□□□□□ -0.42
USHBP1-201ENST00000252597 RNPEPQ9H4A4 650 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF358Q9NW07 568 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SNCAIPQ9Y6H5 919 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 A6NJR5 290 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 TM9SF1O15321 606 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 DLDP09622 509 aaKnown RBP12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SERPINB5P36952 375 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 ATXN1P54253 815 aaKnown RBP12.42□□□□□ -0.42
USHBP1-201ENST00000252597 LAMB3Q13751 1172 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 OLFML2BQ68BL8 750 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 SLFN12LQ6IEE8 588 aa12.42□□□□□ -0.42
USHBP1-201ENST00000252597 RSBN1LQ6PCB5 846 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms