RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TRMT6Q9UJA5 497 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SNRNP200O75643 2136 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 EXTL3O43909 919 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TGFB3P10600 412 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TSHRP16473 764 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PPIBP23284 216 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 RRM1P23921 792 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FXR2P51116 673 aaKnown RBP eCLIP6.26□□□□□ -1.416e-7■■■■□ 21.3
VPS13D-201ENST00000011700 ACTR3P61158 418 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 RUNDC3AQ59EK9 446 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TMPRSS6Q8IU80 811 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 RASSF5Q8WWW0 418 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 THRSPQ92748 146 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TEX13BQ9BXU2 312 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FHDC1Q9C0D6 1143 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 VCPKMTQ9H867 229 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 VTA1Q9NP79 307 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PNPLA6Q8IY17 1366 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ATP9AO75110 1047 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 USP17L8P0C7I0 530 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 S100A1P23297 94 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 POLD2P49005 469 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FXR1P51114 621 aaKnown RBP eCLIP6.26□□□□□ -1.411e-6■■■□□ 17.8
VPS13D-201ENST00000011700 CREMQ03060 361 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TRIM28Q13263 835 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 R3HDM1Q15032 1099 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FMR1NBQ8N0W7 255 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PIAS4Q8N2W9 510 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SRFBP1Q8NEF9 429 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 NKX2-3Q8TAU0 364 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CAVIN3Q969G5 261 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 THTPAQ9BU02 230 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FBXO44Q9H4M3 255 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF112Q9UJU3 913 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 USP17L5A8MUK1 530 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 IFRD1O00458 451 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MPZL2O60487 215 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SASH1O94885 1247 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SRGNP10124 158 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 HPGDP15428 266 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ADCY1Q08828 1119 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CYP51A1Q16850 503 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 IRAK1BP1Q5VVH5 260 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CCDC149Q6ZUS6 474 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SFR1Q86XK3 245 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ACMSDQ8TDX5 336 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SLC13A1Q9BZW2 595 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CCDC59Q9P031 241 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SLAIN2Q9P270 581 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SAE1Q9UBE0 346 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SFMBT1Q9UHJ3 866 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PLAGL2Q9UPG8 496 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MYRFQ9Y2G1 1151 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 WDR91A4D1P6 747 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ODC1P11926 461 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 POLR2EP19388 210 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PTGER2P43116 358 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CCNG1P51959 295 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ENPEPQ07075 957 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 IL18R1Q13478 541 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 LYPLAL1Q5VWZ2 237 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SCARA3Q6AZY7 606 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PRR5LQ6MZQ0 368 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 BNC2Q6ZN30 1099 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ZDHHC13Q8IUH4 622 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM132CQ8N3T6 1108 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 C1orf131Q8NDD1 294 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ANKS1AQ92625 1134 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 AP1M1Q9BXS5 423 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF341Q9BYN7 854 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TASP1Q9H6P5 420 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CYP3A43Q9HB55 503 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 NPHS2Q9NP85 383 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MIEF1Q9NQG6 463 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 NCAM1P13591 858 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 EIF5AP63241 154 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PPIL2Q13356 520 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PTRHD1Q6GMV3 140 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 HEXDCQ8WVB3 486 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PANX3Q96QZ0 392 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MKL2Q9ULH7 1088 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ST3GAL5Q9UNP4 418 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SNPHO15079 494 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CLTBP09497 229 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TNFRSF8P28908 595 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PTPN4P29074 926 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 GRK4P32298 578 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 HUNKP57058 714 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 DALRD3Q5D0E6 543 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MINDY2Q8NBR6 621 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MDM1Q8TC05 714 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PIGOQ8TEQ8 1089 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ATL1Q8WXF7 558 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 EZH1Q92800 747 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MNTQ99583 582 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 COQ7Q99807 217 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PLA2G12BQ9BX93 195 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TRIM9Q9C026 710 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 COMMD9Q9P000 198 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 BTBD3Q9Y2F9 522 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms