RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C PEX29Q03370 554 aa5.63□□□□□ -1.51
CDC48YDL126C NUT2Q06213 157 aa5.63□□□□□ -1.51
CDC48YDL126C MNL2Q12205 849 aa5.63□□□□□ -1.51
CDC48YDL126C ASF1P32447 279 aa5.62□□□□□ -1.51
CDC48YDL126C BOI1P38041 980 aaKnown RBP5.62□□□□□ -1.51
CDC48YDL126C PMC1P38929 1173 aaPredicted RBP5.62□□□□□ -1.51
CDC48YDL126C ZDS1P50111 915 aaKnown RBP5.62□□□□□ -1.51
CDC48YDL126C PNP1Q05788 311 aa5.62□□□□□ -1.51
CDC48YDL126C NUP192P47054 1683 aa5.62□□□□□ -1.51
CDC48YDL126C CST6P40535 587 aa5.62□□□□□ -1.51
CDC48YDL126C YAF9P53930 226 aa5.62□□□□□ -1.51
CDC48YDL126C PSH1Q12161 406 aa5.62□□□□□ -1.51
CDC48YDL126C TY3B-IQ7LHG5 1498 aaKnown RBP5.61□□□□□ -1.51
CDC48YDL126C POL32P47110 350 aa5.61□□□□□ -1.51
CDC48YDL126C KAR5Q04746 504 aa5.61□□□□□ -1.51
CDC48YDL126C BUD20Q08004 166 aaPredicted RBP5.61□□□□□ -1.51
CDC48YDL126C SEC8P32855 1065 aa5.6□□□□□ -1.51
CDC48YDL126C PAC1P39946 494 aaKnown RBP5.6□□□□□ -1.51
CDC48YDL126C YPR015CQ12531 247 aa5.6□□□□□ -1.51
CDC48YDL126C DNF3Q12674 1656 aa5.6□□□□□ -1.51
CDC48YDL126C PDC1P06169 563 aaKnown RBP5.6□□□□□ -1.51
CDC48YDL126C RIX1P38883 763 aaPredicted RBP5.6□□□□□ -1.51
CDC48YDL126C YBL029C-AQ3E756 94 aa5.6□□□□□ -1.51
CDC48YDL126C HAP1P0CE41 1502 aa5.6□□□□□ -1.51
CDC48YDL126C SVL3Q03088 825 aaKnown RBP5.59□□□□□ -1.51
CDC48YDL126C MOD5P07884 428 aa5.59□□□□□ -1.51
CDC48YDL126C ACF4P47129 309 aa5.59□□□□□ -1.51
CDC48YDL126C TSC13Q99190 310 aa5.59□□□□□ -1.51
CDC48YDL126C GRS1P38088 690 aaKnown RBP5.58□□□□□ -1.52
CDC48YDL126C ENP1P38333 483 aaKnown RBP5.58□□□□□ -1.52
CDC48YDL126C WSC3Q12215 556 aa5.58□□□□□ -1.52
CDC48YDL126C LSO1Q3E827 93 aa5.58□□□□□ -1.52
CDC48YDL126C SRS2P12954 1174 aa5.58□□□□□ -1.52
CDC48YDL126C TEC1P18412 486 aa5.58□□□□□ -1.52
CDC48YDL126C VAC17P25591 423 aa5.58□□□□□ -1.52
CDC48YDL126C TPD3P31383 635 aa5.58□□□□□ -1.52
CDC48YDL126C SUB1P54000 292 aaKnown RBP5.58□□□□□ -1.52
CDC48YDL126C HAP4P14064 554 aa5.57□□□□□ -1.52
CDC48YDL126C SOH1P38633 127 aa5.57□□□□□ -1.52
CDC48YDL126C QDR1P40475 563 aa5.57□□□□□ -1.52
CDC48YDL126C APC11Q12157 165 aa5.57□□□□□ -1.52
CDC48YDL126C MHP1P43638 1398 aa5.57□□□□□ -1.52
CDC48YDL126C UBP1P25037 809 aa5.57□□□□□ -1.52
CDC48YDL126C TYS1P36421 394 aaKnown RBP5.56□□□□□ -1.52
CDC48YDL126C TIF11P38912 153 aaKnown RBP5.56□□□□□ -1.52
CDC48YDL126C FYV10P40492 516 aa5.56□□□□□ -1.52
CDC48YDL126C YNL035CP53962 389 aaKnown RBP5.56□□□□□ -1.52
CDC48YDL126C STE20Q03497 939 aaKnown RBP5.56□□□□□ -1.52
CDC48YDL126C SVF1Q05515 481 aa5.56□□□□□ -1.52
CDC48YDL126C GAS4Q08271 471 aa5.56□□□□□ -1.52
CDC48YDL126C SEC3P33332 1336 aaKnown RBP5.56□□□□□ -1.52
CDC48YDL126C IXR1P33417 597 aa5.56□□□□□ -1.52
CDC48YDL126C TAF5P38129 798 aa5.56□□□□□ -1.52
CDC48YDL126C ESL2P36168 1195 aa5.55□□□□□ -1.52
CDC48YDL126C YAP3P38749 330 aa5.55□□□□□ -1.52
CDC48YDL126C ULI1P43604 169 aa5.55□□□□□ -1.52
CDC48YDL126C BRE1Q07457 700 aaKnown RBP5.55□□□□□ -1.52
CDC48YDL126C ENV9Q08651 330 aa5.55□□□□□ -1.52
CDC48YDL126C CBC2Q08920 208 aaKnown RBP RIP-Chip data5.55□□□□□ -1.52not detected
CDC48YDL126C YLR419WQ06698 1435 aaKnown RBP5.55□□□□□ -1.52
CDC48YDL126C NMD2P38798 1089 aaKnown RBP5.55□□□□□ -1.52
CDC48YDL126C TOS4Q06266 489 aa5.55□□□□□ -1.52
CDC48YDL126C PHO4P07270 312 aaKnown RBP5.54□□□□□ -1.52
CDC48YDL126C GUT2P32191 649 aa5.54□□□□□ -1.52
CDC48YDL126C TOA1P32773 286 aa5.54□□□□□ -1.52
CDC48YDL126C TAT2P38967 592 aa5.54□□□□□ -1.52
CDC48YDL126C OYE2Q03558 400 aaKnown RBP5.54□□□□□ -1.52
CDC48YDL126C RPA135P22138 1203 aaKnown RBP5.54□□□□□ -1.52
CDC48YDL126C IOC3P43596 787 aa5.54□□□□□ -1.52
CDC48YDL126C RNH70P53331 553 aa5.54□□□□□ -1.52
CDC48YDL126C BCK1Q01389 1478 aa5.54□□□□□ -1.52
CDC48YDL126C MET1P36150 593 aa5.53□□□□□ -1.52
CDC48YDL126C PLP2Q12017 286 aa5.53□□□□□ -1.52
CDC48YDL126C PDI1P17967 522 aaKnown RBP5.53□□□□□ -1.52
CDC48YDL126C SEC61P32915 480 aa5.53□□□□□ -1.52
CDC48YDL126C TOM20P35180 183 aa5.53□□□□□ -1.52
CDC48YDL126C FPR4Q06205 392 aaPredicted RBP5.53□□□□□ -1.52
CDC48YDL126C HXT10P43581 546 aa5.52□□□□□ -1.53
CDC48YDL126C CAB1Q04430 367 aa5.52□□□□□ -1.53
CDC48YDL126C CIT2P08679 460 aa5.52□□□□□ -1.53
CDC48YDL126C NGR1P32831 672 aaKnown RBP5.52□□□□□ -1.53
CDC48YDL126C ARH1P48360 493 aa5.52□□□□□ -1.53
CDC48YDL126C TBF1Q02457 562 aa5.51□□□□□ -1.53
CDC48YDL126C HDA3Q06623 655 aa5.51□□□□□ -1.53
CDC48YDL126C PUN1Q06991 263 aa5.51□□□□□ -1.53
CDC48YDL126C SPT7P35177 1332 aa5.51□□□□□ -1.53
CDC48YDL126C DAL5P15365 543 aa5.51□□□□□ -1.53
CDC48YDL126C KIP3P53086 805 aaKnown RBP5.51□□□□□ -1.53
CDC48YDL126C ALD3P54114 506 aa5.51□□□□□ -1.53
CDC48YDL126C ALR1Q08269 859 aa5.51□□□□□ -1.53
CDC48YDL126C SCT1P32784 759 aa5.5□□□□□ -1.53
CDC48YDL126C YBR197CP38306 217 aa5.5□□□□□ -1.53
CDC48YDL126C GLO3P38682 493 aaKnown RBP5.5□□□□□ -1.53
CDC48YDL126C RRD1P40454 393 aaKnown RBP5.5□□□□□ -1.53
CDC48YDL126C DAK2P43550 591 aa5.5□□□□□ -1.53
CDC48YDL126C HAP5Q02516 242 aa5.5□□□□□ -1.53
CDC48YDL126C RAD9P14737 1309 aa5.5□□□□□ -1.53
CDC48YDL126C GAL11P19659 1081 aa5.5□□□□□ -1.53
CDC48YDL126C BUD31P25337 157 aaPredicted RBP5.5□□□□□ -1.53
CDC48YDL126C GRX4P32642 244 aa5.5□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 76.2 ms