RNA–Protein interactions for RNA: ENST00000635273.1

SMARCA2-238, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-238	ENST00000635273	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	MRPL50	Q8N5N7	158 aa	Known RBP	12.09	□□□□□ -0.47
SMARCA2-238	ENST00000635273	SERPINA10	Q9UK55	444 aa		12.09	□□□□□ -0.47
SMARCA2-238	ENST00000635273	HOXA2	O43364	376 aa		12.08	□□□□□ -0.48
SMARCA2-238	ENST00000635273	SLC10A3	P09131	477 aa		12.08	□□□□□ -0.48
SMARCA2-238	ENST00000635273	SWT1	Q5T5J6	900 aa	Known RBP	12.08	□□□□□ -0.48
SMARCA2-238	ENST00000635273	TRAF7	Q6Q0C0	670 aa		12.08	□□□□□ -0.48
SMARCA2-238	ENST00000635273	CCDC97	Q96F63	343 aa	Predicted RBP	12.08	□□□□□ -0.48
SMARCA2-238	ENST00000635273	ITGBL1	O95965	494 aa	Predicted RBP	12.07	□□□□□ -0.48
SMARCA2-238	ENST00000635273	HRC	P23327	699 aa		12.07	□□□□□ -0.48
SMARCA2-238	ENST00000635273	RABGEF1	Q9UJ41	708 aa		12.07	□□□□□ -0.48
SMARCA2-238	ENST00000635273	FDX1	P10109	184 aa		12.06	□□□□□ -0.48
SMARCA2-238	ENST00000635273	TRIM26	Q12899	539 aa	Predicted RBP	12.06	□□□□□ -0.48
SMARCA2-238	ENST00000635273	ZBTB3	Q9H5J0	574 aa		12.06	□□□□□ -0.48
SMARCA2-238	ENST00000635273	PODXL2	Q9NZ53	605 aa		12.06	□□□□□ -0.48
SMARCA2-238	ENST00000635273	USP17L8	P0C7I0	530 aa		12.05	□□□□□ -0.48
SMARCA2-238	ENST00000635273	PCDHGC3	Q9UN70	934 aa		12.05	□□□□□ -0.48
SMARCA2-238	ENST00000635273	BHMG1	C9JSJ3	638 aa	Predicted RBP	12.04	□□□□□ -0.48
SMARCA2-238	ENST00000635273	NBPF3	Q9H094	633 aa		12.04	□□□□□ -0.48
SMARCA2-238	ENST00000635273	PRM3	Q9NNZ6	103 aa		12.04	□□□□□ -0.48
SMARCA2-238	ENST00000635273	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.04	□□□□□ -0.48
SMARCA2-238	ENST00000635273	ABL2	P42684	1182 aa		12.03	□□□□□ -0.48
SMARCA2-238	ENST00000635273	WWC1	Q8IX03	1113 aa		12.03	□□□□□ -0.48
SMARCA2-238	ENST00000635273	TBC1D2B	Q9UPU7	963 aa		12.03	□□□□□ -0.48
SMARCA2-238	ENST00000635273	HDGF	P51858	240 aa	Known RBP	12.02	□□□□□ -0.49
SMARCA2-238	ENST00000635273	HLA-C	Q95604	372 aa		12.02	□□□□□ -0.49
SMARCA2-238	ENST00000635273	GUCA2A	Q02747	115 aa		12.01	□□□□□ -0.49
SMARCA2-238	ENST00000635273	PDIA4	P13667	645 aa	Known RBP	12	□□□□□ -0.49
SMARCA2-238	ENST00000635273	FAM98C	Q17RN3	349 aa	Known RBP	12	□□□□□ -0.49
SMARCA2-238	ENST00000635273	GJD4	Q96KN9	370 aa	Predicted RBP	11.99	□□□□□ -0.49
SMARCA2-238	ENST00000635273	CTDSPL2	Q05D32	466 aa		11.98	□□□□□ -0.49
SMARCA2-238	ENST00000635273	GFRA3	O60609	400 aa		11.97	□□□□□ -0.49
SMARCA2-238	ENST00000635273	SLC4A3	P48751	1232 aa		11.97	□□□□□ -0.49
SMARCA2-238	ENST00000635273	MTMR2	Q13614	643 aa		11.97	□□□□□ -0.49
SMARCA2-238	ENST00000635273	POM121C	A8CG34	1229 aa		11.96	□□□□□ -0.49
SMARCA2-238	ENST00000635273	SAMD7	Q7Z3H4	446 aa		11.96	□□□□□ -0.49
SMARCA2-238	ENST00000635273	SLF2	Q8IX21	1173 aa		11.96	□□□□□ -0.49
SMARCA2-238	ENST00000635273	FUT2	Q10981	343 aa		11.95	□□□□□ -0.5
SMARCA2-238	ENST00000635273	GRIPAP1	Q4V328	841 aa		11.95	□□□□□ -0.5
SMARCA2-238	ENST00000635273	CALR3	Q96L12	384 aa	Known RBP	11.95	□□□□□ -0.5
SMARCA2-238	ENST00000635273	NDUFB9	Q9Y6M9	179 aa		11.95	□□□□□ -0.5
SMARCA2-238	ENST00000635273	LAPTM4B	Q86VI4	370 aa		11.94	□□□□□ -0.5
SMARCA2-238	ENST00000635273	HMX1	Q9NP08	348 aa	Predicted RBP	11.94	□□□□□ -0.5
SMARCA2-238	ENST00000635273	CFAP99	D6REC4	459 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	CFH	P08603	1231 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	IRF5	Q13568	498 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	NYAP1	Q6ZVC0	841 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	ANKK1	Q8NFD2	765 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	HELB	Q8NG08	1087 aa	Predicted RBP	11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	GLMN	Q92990	594 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	TRIM34	Q9BYJ4	488 aa		11.93	□□□□□ -0.5
SMARCA2-238	ENST00000635273	LCE2B	O14633	110 aa		11.92	□□□□□ -0.5
SMARCA2-238	ENST00000635273	KCNC4	Q03721	635 aa		11.92	□□□□□ -0.5
SMARCA2-238	ENST00000635273	C6orf229	H3BNL8	230 aa		11.91	□□□□□ -0.5
SMARCA2-238	ENST00000635273	ATP6V1A	P38606	617 aa		11.91	□□□□□ -0.5
SMARCA2-238	ENST00000635273	LRRN4	Q8WUT4	740 aa		11.91	□□□□□ -0.5
SMARCA2-238	ENST00000635273	TSC1	Q92574	1164 aa		11.91	□□□□□ -0.5
SMARCA2-238	ENST00000635273	NISCH	Q9Y2I1	1504 aa		11.9	□□□□□ -0.5
SMARCA2-238	ENST00000635273	GPR37L1	O60883	481 aa		11.89	□□□□□ -0.51
SMARCA2-238	ENST00000635273	NRG2	O14511	850 aa	Predicted RBP	11.88	□□□□□ -0.51
SMARCA2-238	ENST00000635273	ZNF787	Q6DD87	383 aa		11.88	□□□□□ -0.51
SMARCA2-238	ENST00000635273	SYMPK	Q92797	1274 aa	Known RBP	11.88	□□□□□ -0.51
SMARCA2-238	ENST00000635273	RNF40	O75150	1001 aa		11.87	□□□□□ -0.51
SMARCA2-238	ENST00000635273	WASHC4	Q2M389	1173 aa		11.87	□□□□□ -0.51
SMARCA2-238	ENST00000635273	ZFR	Q96KR1	1074 aa	Known RBP	11.87	□□□□□ -0.51
SMARCA2-238	ENST00000635273	HDGFL1	Q5TGJ6	251 aa		11.86	□□□□□ -0.51
SMARCA2-238	ENST00000635273	TRAIP	Q9BWF2	469 aa		11.86	□□□□□ -0.51
SMARCA2-238	ENST00000635273	KMT5B	Q4FZB7	885 aa		11.85	□□□□□ -0.51
SMARCA2-238	ENST00000635273	PRR7	Q8TB68	274 aa		11.85	□□□□□ -0.51
SMARCA2-238	ENST00000635273	ADAMTS19	Q8TE59	1207 aa		11.85	□□□□□ -0.51
SMARCA2-238	ENST00000635273	NECTIN2	Q92692	538 aa		11.85	□□□□□ -0.51
SMARCA2-238	ENST00000635273	PPP1R15A	O75807	674 aa	Predicted RBP	11.84	□□□□□ -0.51
SMARCA2-238	ENST00000635273	EPS8L1	Q8TE68	723 aa		11.84	□□□□□ -0.51
SMARCA2-238	ENST00000635273	ZBTB7C	A1YPR0	619 aa		11.83	□□□□□ -0.52
SMARCA2-238	ENST00000635273	MORN1	Q5T089	497 aa		11.83	□□□□□ -0.52
SMARCA2-238	ENST00000635273	VAC14	Q08AM6	782 aa		11.82	□□□□□ -0.52
SMARCA2-238	ENST00000635273	RETREG2	Q8NC44	543 aa		11.82	□□□□□ -0.52
SMARCA2-238	ENST00000635273	ACTN4	O43707	911 aa	Known RBP	11.81	□□□□□ -0.52
SMARCA2-238	ENST00000635273	SLC27A5	Q9Y2P5	690 aa		11.81	□□□□□ -0.52
SMARCA2-238	ENST00000635273	PER1	O15534	1290 aa	Predicted RBP	11.8	□□□□□ -0.52
SMARCA2-238	ENST00000635273	PUS10	Q3MIT2	529 aa	Known RBP	11.8	□□□□□ -0.52
SMARCA2-238	ENST00000635273	RETREG3	Q86VR2	466 aa		11.8	□□□□□ -0.52
SMARCA2-238	ENST00000635273	NR6A1	Q15406	480 aa		11.79	□□□□□ -0.52
SMARCA2-238	ENST00000635273	ZNF775	Q96BV0	537 aa	Predicted RBP	11.79	□□□□□ -0.52
SMARCA2-238	ENST00000635273	LRCH3	Q96II8	777 aa		11.79	□□□□□ -0.52
SMARCA2-238	ENST00000635273	SOWAHB	A6NEL2	793 aa		11.78	□□□□□ -0.52
SMARCA2-238	ENST00000635273	BCAM	P50895	628 aa		11.78	□□□□□ -0.52
SMARCA2-238	ENST00000635273		Q3C1V9	767 aa		11.78	□□□□□ -0.52
SMARCA2-238	ENST00000635273	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.78	□□□□□ -0.52
SMARCA2-238	ENST00000635273	ACIN1	Q9UKV3	1341 aa	Known RBP	11.78	□□□□□ -0.52
SMARCA2-238	ENST00000635273	DESI1	Q6ICB0	168 aa		11.77	□□□□□ -0.53
SMARCA2-238	ENST00000635273	ALG2	Q9H553	416 aa		11.77	□□□□□ -0.53
SMARCA2-238	ENST00000635273	KCTD17	Q8N5Z5	321 aa		11.75	□□□□□ -0.53
SMARCA2-238	ENST00000635273	CFAP70	Q5T0N1	1121 aa		11.74	□□□□□ -0.53
SMARCA2-238	ENST00000635273	LYPD8	Q6UX82	237 aa		11.74	□□□□□ -0.53
SMARCA2-238	ENST00000635273	PBXIP1	Q96AQ6	731 aa		11.74	□□□□□ -0.53
SMARCA2-238	ENST00000635273	PRR14	Q9BWN1	585 aa		11.74	□□□□□ -0.53
SMARCA2-238	ENST00000635273	PPP1R12C	Q9BZL4	782 aa		11.74	□□□□□ -0.53
SMARCA2-238	ENST00000635273	RFX1	P22670	979 aa		11.72	□□□□□ -0.53
SMARCA2-238	ENST00000635273	SOX11	P35716	441 aa		11.72	□□□□□ -0.53

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