RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP1-219	ENST00000620786	HSP90AB4P	Q58FF6	505 aa		13.91	□□□□□ -0.18
CLIP1-219	ENST00000620786	GOLGA6L3	A6NEY3	463 aa		13.9	□□□□□ -0.18
CLIP1-219	ENST00000620786	CASKIN1	Q8WXD9	1431 aa		13.9	□□□□□ -0.18
CLIP1-219	ENST00000620786	CCDC43	Q96MW1	224 aa	Known RBP	13.9	□□□□□ -0.18
CLIP1-219	ENST00000620786	PRAM1	Q96QH2	718 aa		13.9	□□□□□ -0.18
CLIP1-219	ENST00000620786	TSR1	Q2NL82	804 aa	Known RBP	13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	RNF20	Q5VTR2	975 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	ATP6V1D	Q9Y5K8	247 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	POGZ	Q7Z3K3	1410 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	CC2D2A	Q9P2K1	1620 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	TAT	P17735	454 aa	Predicted RBP	13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	LRRC9	Q6ZRR7	1453 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	WASHC4	Q2M389	1173 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	EXOC6	Q8TAG9	804 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	CNKSR2	Q8WXI2	1034 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	REC8	O95072	547 aa		13.89	□□□□□ -0.19
CLIP1-219	ENST00000620786	ERC2	O15083	957 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	CFAP70	Q5T0N1	1121 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	ANKLE2	Q86XL3	938 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	GAS2L2	Q8NHY3	880 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	CCDC47	Q96A33	483 aa	Known RBP	13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	SNAPC4	Q5SXM2	1469 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	TOM1L2	Q6ZVM7	507 aa		13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	UBTFL1	P0CB47	393 aa	Predicted RBP	13.88	□□□□□ -0.19
CLIP1-219	ENST00000620786	SCAPER	Q9BY12	1400 aa		13.87	□□□□□ -0.19
CLIP1-219	ENST00000620786	DEK	P35659	375 aa	Known RBP	13.86	□□□□□ -0.19
CLIP1-219	ENST00000620786	KRI1	Q8N9T8	703 aa	Known RBP	13.86	□□□□□ -0.19
CLIP1-219	ENST00000620786	FAM161A	Q3B820	660 aa		13.86	□□□□□ -0.19
CLIP1-219	ENST00000620786	PLEKHH2	Q8IVE3	1493 aa		13.86	□□□□□ -0.19
CLIP1-219	ENST00000620786	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.86	□□□□□ -0.19
CLIP1-219	ENST00000620786	DDX54	Q8TDD1	881 aa	Known RBP	13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	IPO9	Q96P70	1041 aa	Known RBP	13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	KIF21B	O75037	1637 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	CCDC30	Q5VVM6	783 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	GOLGA6L19	H0YKK7	550 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	MTMR7	Q9Y216	660 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	ZBED9	Q6R2W3	1325 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	TPM1	P09493	284 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	CABP4	P57796	275 aa		13.85	□□□□□ -0.19
CLIP1-219	ENST00000620786	IK	Q13123	557 aa	Predicted RBP	13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	CDK19	Q9BWU1	502 aa		13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	DDX11L8	A8MPP1	907 aa		13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	FOSB	P53539	338 aa		13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	RAPGEF3	O95398	923 aa		13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	RALYL	Q86SE5	291 aa	Known RBP	13.84	□□□□□ -0.19
CLIP1-219	ENST00000620786	BECN2	A8MW95	431 aa		13.83	□□□□□ -0.19
CLIP1-219	ENST00000620786	MTHFS	P49914	203 aa		13.83	□□□□□ -0.2
CLIP1-219	ENST00000620786	GOLGA6L1	Q8N7Z2	621 aa		13.83	□□□□□ -0.2
CLIP1-219	ENST00000620786	KIF7	Q2M1P5	1343 aa		13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	C9orf84	Q5VXU9	1444 aa		13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	TBC1D2B	Q9UPU7	963 aa		13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	INTS3	Q68E01	1043 aa	Known RBP	13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	SPG7	Q9UQ90	795 aa		13.82	□□□□□ -0.2
CLIP1-219	ENST00000620786	CCDC7	Q96M83	1385 aa		13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	SAFB	Q15424	915 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	SLC26A8	Q96RN1	970 aa		13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	NINL	Q9Y2I6	1382 aa		13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	CCAR1	Q8IX12	1150 aa	Known RBP	13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	HOOK1	Q9UJC3	728 aa	Known RBP	13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	CNTLN	Q9NXG0	1405 aa		13.81	□□□□□ -0.2
CLIP1-219	ENST00000620786	PRKAR2B	P31323	418 aa		13.8	□□□□□ -0.2
CLIP1-219	ENST00000620786	ARID3A	Q99856	593 aa		13.8	□□□□□ -0.2
CLIP1-219	ENST00000620786	CNNM1	Q9NRU3	951 aa		13.8	□□□□□ -0.2
CLIP1-219	ENST00000620786	DNAJC2	Q99543	621 aa	Known RBP	13.8	□□□□□ -0.2
CLIP1-219	ENST00000620786	DDX49	Q9Y6V7	483 aa	Known RBP	13.8	□□□□□ -0.2
CLIP1-219	ENST00000620786	HECW1	Q76N89	1606 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	ANKRD20A12P	Q8NF67	263 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	EHBP1L1	Q8N3D4	1523 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	ZNF692	Q9BU19	519 aa	Predicted RBP	13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	CFTR	P13569	1480 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	FSD1	Q9BTV5	496 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	BRMS1	Q9HCU9	246 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	PRDM11	Q9NQV5	511 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	CABP1	Q9NZU7	370 aa		13.79	□□□□□ -0.2
CLIP1-219	ENST00000620786	TOPBP1	Q92547	1522 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	PDE4A	P27815	886 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	XPC	Q01831	940 aa	Predicted RBP	13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	BICD2	Q8TD16	824 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	SLC52A1	Q9NWF4	448 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	TTC39A	Q5SRH9	613 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	LNPK	Q9C0E8	428 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	VPS37C	A5D8V6	355 aa	Predicted RBP	13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	SLC4A3	P48751	1232 aa		13.78	□□□□□ -0.2
CLIP1-219	ENST00000620786	KDM4A	O75164	1064 aa		13.77	□□□□□ -0.2
CLIP1-219	ENST00000620786	SMC3	Q9UQE7	1217 aa		13.77	□□□□□ -0.2
CLIP1-219	ENST00000620786	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.77	□□□□□ -0.2
CLIP1-219	ENST00000620786	CNTROB	Q8N137	903 aa		13.77	□□□□□ -0.2
CLIP1-219	ENST00000620786	GNL3L	Q9NVN8	582 aa	Known RBP	13.77	□□□□□ -0.21
CLIP1-219	ENST00000620786	ERBIN	Q96RT1	1412 aa		13.77	□□□□□ -0.21
CLIP1-219	ENST00000620786	SLC3A2	P08195	630 aa	Known RBP	13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	GNAI3	P08754	354 aa		13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	EFCAB5	A4FU69	1503 aa		13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	PANK1	Q8TE04	598 aa		13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	SULT6B1	Q6IMI4	303 aa		13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	HFM1	A2PYH4	1435 aa		13.76	□□□□□ -0.21
CLIP1-219	ENST00000620786	SURF6	O75683	361 aa	Known RBP	13.75	□□□□□ -0.21
CLIP1-219	ENST00000620786	XBP1	P17861	261 aa		13.75	□□□□□ -0.21
CLIP1-219	ENST00000620786	SART3	Q15020	963 aa	Known RBP	13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms