RNA–Protein interactions for RNA: ENST00000592619.5

VMP1-215, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 838 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-215ENST00000592619 GRIPAP1Q4V328 841 aa11.63□□□□□ -0.55
VMP1-215ENST00000592619 MTMR2Q13614 643 aa11.62□□□□□ -0.55
VMP1-215ENST00000592619 AXIN2Q9Y2T1 843 aa11.62□□□□□ -0.55
VMP1-215ENST00000592619 TBC1D2BQ9UPU7 963 aa11.61□□□□□ -0.55
VMP1-215ENST00000592619 GUCA2AQ02747 115 aa11.6□□□□□ -0.55
VMP1-215ENST00000592619 SAMD7Q7Z3H4 446 aa11.6□□□□□ -0.55
VMP1-215ENST00000592619 HLA-CQ95604 372 aa11.6□□□□□ -0.55
VMP1-215ENST00000592619 GJD4Q96KN9 370 aaPredicted RBP11.6□□□□□ -0.55
VMP1-215ENST00000592619 NBPF3Q9H094 633 aa11.6□□□□□ -0.55
VMP1-215ENST00000592619 BHMG1C9JSJ3 638 aaPredicted RBP11.59□□□□□ -0.55
VMP1-215ENST00000592619 ABL2P42684 1182 aa11.59□□□□□ -0.55
VMP1-215ENST00000592619 FUT2Q10981 343 aa11.59□□□□□ -0.55
VMP1-215ENST00000592619 ANKRD13DQ6ZTN6 518 aa11.59□□□□□ -0.55
VMP1-215ENST00000592619 TK2O00142 265 aa11.58□□□□□ -0.56
VMP1-215ENST00000592619 ATP6V1AP38606 617 aa11.58□□□□□ -0.56
VMP1-215ENST00000592619 NDUFB9Q9Y6M9 179 aa11.58□□□□□ -0.56
VMP1-215ENST00000592619 CFHP08603 1231 aa11.57□□□□□ -0.56
VMP1-215ENST00000592619 CTDSPL2Q05D32 466 aa11.57□□□□□ -0.56
VMP1-215ENST00000592619 HELBQ8NG08 1087 aaPredicted RBP11.57□□□□□ -0.56
VMP1-215ENST00000592619 NECTIN2Q92692 538 aa11.56□□□□□ -0.56
VMP1-215ENST00000592619 CFAP99D6REC4 459 aa11.54□□□□□ -0.56
VMP1-215ENST00000592619 PDIA4P13667 645 aaKnown RBP11.54□□□□□ -0.56
VMP1-215ENST00000592619 ZFRQ96KR1 1074 aaKnown RBP11.54□□□□□ -0.56
VMP1-215ENST00000592619 TRIM34Q9BYJ4 488 aa11.54□□□□□ -0.56
VMP1-215ENST00000592619 C6orf229H3BNL8 230 aa11.53□□□□□ -0.56
VMP1-215ENST00000592619 IRF5Q13568 498 aa11.53□□□□□ -0.56
VMP1-215ENST00000592619 KMT5BQ4FZB7 885 aa11.53□□□□□ -0.56
VMP1-215ENST00000592619 CALR3Q96L12 384 aaKnown RBP11.53□□□□□ -0.56
VMP1-215ENST00000592619 HMX1Q9NP08 348 aaPredicted RBP11.53□□□□□ -0.56
VMP1-215ENST00000592619 WASHC4Q2M389 1173 aa11.52□□□□□ -0.57
VMP1-215ENST00000592619 POM121CA8CG34 1229 aa11.51□□□□□ -0.57
VMP1-215ENST00000592619 TRIM26Q12899 539 aaPredicted RBP11.51□□□□□ -0.57
VMP1-215ENST00000592619 ACTN4O43707 911 aaKnown RBP11.5□□□□□ -0.57
VMP1-215ENST00000592619 GPR37L1O60883 481 aa11.5□□□□□ -0.57
VMP1-215ENST00000592619 MRPL50Q8N5N7 158 aaKnown RBP11.5□□□□□ -0.57
VMP1-215ENST00000592619 GLMNQ92990 594 aa11.5□□□□□ -0.57
VMP1-215ENST00000592619 PODXL2Q9NZ53 605 aa11.5□□□□□ -0.57
VMP1-215ENST00000592619 MORN1Q5T089 497 aa11.49□□□□□ -0.57
VMP1-215ENST00000592619 LRRN4Q8WUT4 740 aa11.49□□□□□ -0.57
VMP1-215ENST00000592619 RNF40O75150 1001 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 LSM11P83369 360 aaKnown RBP eCLIP11.48□□□□□ -0.57
VMP1-215ENST00000592619 RETREG3Q86VR2 466 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 PRR7Q8TB68 274 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 TSC1Q92574 1164 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 LRCH3Q96II8 777 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 PRR14Q9BWN1 585 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 PLA2G2EQ9NZK7 142 aa11.48□□□□□ -0.57
VMP1-215ENST00000592619 PPP1R15AO75807 674 aaPredicted RBP11.47□□□□□ -0.57
VMP1-215ENST00000592619 Q3C1V9 767 aa11.47□□□□□ -0.57
VMP1-215ENST00000592619 DESI1Q6ICB0 168 aa11.47□□□□□ -0.57
VMP1-215ENST00000592619 ADGRD1Q6QNK2 874 aa11.46□□□□□ -0.57
VMP1-215ENST00000592619 SYMPKQ92797 1274 aaKnown RBP11.46□□□□□ -0.57
VMP1-215ENST00000592619 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.46□□□□□ -0.57
VMP1-215ENST00000592619 TRAIPQ9BWF2 469 aa11.45□□□□□ -0.58
VMP1-215ENST00000592619 SLC27A5Q9Y2P5 690 aa11.45□□□□□ -0.58
VMP1-215ENST00000592619 HRO43593 1189 aa11.44□□□□□ -0.58
VMP1-215ENST00000592619 HDGFL1Q5TGJ6 251 aa11.44□□□□□ -0.58
VMP1-215ENST00000592619 SALL2Q9Y467 1007 aaPredicted RBP11.43□□□□□ -0.58
VMP1-215ENST00000592619 ADAMTS19Q8TE59 1207 aa11.42□□□□□ -0.58
VMP1-215ENST00000592619 EPS8L1Q8TE68 723 aa11.42□□□□□ -0.58
VMP1-215ENST00000592619 PER1O15534 1290 aaPredicted RBP11.41□□□□□ -0.58
VMP1-215ENST00000592619 PUS10Q3MIT2 529 aaKnown RBP11.41□□□□□ -0.58
VMP1-215ENST00000592619 ALG2Q9H553 416 aa11.4□□□□□ -0.58
VMP1-215ENST00000592619 SOX11P35716 441 aa11.39□□□□□ -0.59
VMP1-215ENST00000592619 VAC14Q08AM6 782 aa11.39□□□□□ -0.59
VMP1-215ENST00000592619 NR6A1Q15406 480 aa11.39□□□□□ -0.59
VMP1-215ENST00000592619 LYPD8Q6UX82 237 aa11.39□□□□□ -0.59
VMP1-215ENST00000592619 ANKK1Q8NFD2 765 aa11.39□□□□□ -0.59
VMP1-215ENST00000592619 SOWAHBA6NEL2 793 aa11.38□□□□□ -0.59
VMP1-215ENST00000592619 ACIN1Q9UKV3 1341 aaKnown RBP11.37□□□□□ -0.59
VMP1-215ENST00000592619 ZBTB7CA1YPR0 619 aa11.37□□□□□ -0.59
VMP1-215ENST00000592619 PPP4CP60510 307 aa11.37□□□□□ -0.59
VMP1-215ENST00000592619 BRICD5Q6PL45 260 aa11.37□□□□□ -0.59
VMP1-215ENST00000592619 PNMA1Q8ND90 353 aa11.37□□□□□ -0.59
VMP1-215ENST00000592619 USB1Q9BQ65 265 aaKnown RBP11.37□□□□□ -0.59
VMP1-215ENST00000592619 HCSTQ9UBK5 93 aa11.37□□□□□ -0.59
VMP1-215ENST00000592619 RNF19BQ6ZMZ0 732 aa11.36□□□□□ -0.59
VMP1-215ENST00000592619 RETREG2Q8NC44 543 aa11.36□□□□□ -0.59
VMP1-215ENST00000592619 GOLGA8CPA6NN73 597 aa11.35□□□□□ -0.59
VMP1-215ENST00000592619 BLOC1S3Q6QNY0 202 aa11.35□□□□□ -0.59
VMP1-215ENST00000592619 STAC3Q96MF2 364 aa11.35□□□□□ -0.59
VMP1-215ENST00000592619 TSR3Q9UJK0 312 aaKnown RBP11.35□□□□□ -0.59
VMP1-215ENST00000592619 PDE4CQ08493 712 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 SCUBE3Q8IX30 993 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 KCTD17Q8N5Z5 321 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 PBXIP1Q96AQ6 731 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 THAP11Q96EK4 314 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 PPP1R12CQ9BZL4 782 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 HPS5Q9UPZ3 1129 aa11.34□□□□□ -0.59
VMP1-215ENST00000592619 APLP1P51693 650 aa11.33□□□□□ -0.6
VMP1-215ENST00000592619 CFAP70Q5T0N1 1121 aa11.33□□□□□ -0.6
VMP1-215ENST00000592619 NR1I2O75469 434 aa11.32□□□□□ -0.6
VMP1-215ENST00000592619 FMNL1O95466 1100 aaPredicted RBP11.32□□□□□ -0.6
VMP1-215ENST00000592619 SRPK2P78362 688 aaKnown RBP11.32□□□□□ -0.6
VMP1-215ENST00000592619 PCDHB3Q9Y5E6 796 aa11.31□□□□□ -0.6
VMP1-215ENST00000592619 BCAMP50895 628 aa11.3□□□□□ -0.6
VMP1-215ENST00000592619 EIF4G2P78344 907 aaKnown RBP eCLIP11.3□□□□□ -0.65e-10■■■■■ 27.7
VMP1-215ENST00000592619 SEMA3FQ13275 785 aa11.3□□□□□ -0.6
VMP1-215ENST00000592619 PALM3A6NDB9 673 aaPredicted RBP11.29□□□□□ -0.6
VMP1-215ENST00000592619 F12P00748 615 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms