RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SLC52A1Q9NWF4 448 aa16.94■□□□□ 0.3
SMAD4-211ENST00000590499 MYO5BQ9ULV0 1848 aa16.93■□□□□ 0.3
SMAD4-211ENST00000590499 TMEM2Q9UHN6 1383 aa16.93■□□□□ 0.3
SMAD4-211ENST00000590499 FBXO41Q8TF61 875 aa16.93■□□□□ 0.3
SMAD4-211ENST00000590499 ZNF335Q9H4Z2 1342 aaPredicted RBP16.93■□□□□ 0.3
SMAD4-211ENST00000590499 ST18O60284 1047 aa16.92■□□□□ 0.3
SMAD4-211ENST00000590499 TMEM131LA2VDJ0 1609 aa16.92■□□□□ 0.3
SMAD4-211ENST00000590499 SPHKAPQ2M3C7 1700 aa16.91■□□□□ 0.3
SMAD4-211ENST00000590499 LTKP29376 864 aa16.9■□□□□ 0.3
SMAD4-211ENST00000590499 IQSEC2Q5JU85 1478 aa16.9■□□□□ 0.3
SMAD4-211ENST00000590499 TMEM106CQ9BVX2 250 aa16.89■□□□□ 0.29
SMAD4-211ENST00000590499 VASPP50552 380 aaPredicted RBP16.87■□□□□ 0.29
SMAD4-211ENST00000590499 TXNDC2Q86VQ3 553 aa16.87■□□□□ 0.29
SMAD4-211ENST00000590499 ZFYVE9O95405 1425 aa16.87■□□□□ 0.29
SMAD4-211ENST00000590499 STRCP1A6NGW2 1772 aa16.86■□□□□ 0.29
SMAD4-211ENST00000590499 TRPM2O94759 1503 aa16.85■□□□□ 0.29
SMAD4-211ENST00000590499 CPS1P31327 1500 aa16.85■□□□□ 0.29
SMAD4-211ENST00000590499 EID1Q9Y6B2 187 aa16.84■□□□□ 0.29
SMAD4-211ENST00000590499 PLCG2P16885 1265 aa16.83■□□□□ 0.28
SMAD4-211ENST00000590499 CLTCL1P53675 1640 aa16.82■□□□□ 0.28
SMAD4-211ENST00000590499 IRX5P78411 483 aaPredicted RBP16.82■□□□□ 0.28
SMAD4-211ENST00000590499 RIMS2Q9UQ26 1411 aa16.81■□□□□ 0.28
SMAD4-211ENST00000590499 TRIM52Q96A61 297 aa16.8■□□□□ 0.28
SMAD4-211ENST00000590499 FAM212AQ96EL1 285 aa16.8■□□□□ 0.28
SMAD4-211ENST00000590499 SETD5Q9C0A6 1442 aa16.79■□□□□ 0.28
SMAD4-211ENST00000590499 PLEKHG1Q9ULL1 1385 aa16.77■□□□□ 0.28
SMAD4-211ENST00000590499 LRRC7Q96NW7 1537 aa16.76■□□□□ 0.27
SMAD4-211ENST00000590499 KIF1BO60333 1816 aa16.76■□□□□ 0.27
SMAD4-211ENST00000590499 CHGAP10645 457 aaKnown RBP16.75■□□□□ 0.27
SMAD4-211ENST00000590499 NWD1Q149M9 1564 aa16.74■□□□□ 0.27
SMAD4-211ENST00000590499 KLHL34Q8N239 644 aa16.74■□□□□ 0.27
SMAD4-211ENST00000590499 XIRP1Q702N8 1843 aaKnown RBP16.74■□□□□ 0.27
SMAD4-211ENST00000590499 HDGFP51858 240 aaKnown RBP16.73■□□□□ 0.27
SMAD4-211ENST00000590499 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMAD4-211ENST00000590499 RAB3GAP2Q9H2M9 1393 aa16.73■□□□□ 0.27
SMAD4-211ENST00000590499 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
SMAD4-211ENST00000590499 ADAMTS13Q76LX8 1427 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 NEXMIFQ5QGS0 1516 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 ALKQ9UM73 1620 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 SLC26A8Q96RN1 970 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 MPHOSPH9Q99550 1183 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 DIP2AQ14689 1571 aa16.72■□□□□ 0.27
SMAD4-211ENST00000590499 NRXN3Q9Y4C0 1643 aa16.71■□□□□ 0.27
SMAD4-211ENST00000590499 CHD2O14647 1828 aaKnown RBP16.71■□□□□ 0.27
SMAD4-211ENST00000590499 OCEL1Q9H607 264 aa16.71■□□□□ 0.27
SMAD4-211ENST00000590499 SETBP1Q9Y6X0 1596 aa16.7■□□□□ 0.26
SMAD4-211ENST00000590499 PPP1R15AO75807 674 aaPredicted RBP16.7■□□□□ 0.26
SMAD4-211ENST00000590499 NKTRP30414 1462 aaKnown RBP16.69■□□□□ 0.26
SMAD4-211ENST00000590499 KCNA6P17658 529 aa16.69■□□□□ 0.26
SMAD4-211ENST00000590499 NUTM2DQ5VT03 806 aaPredicted RBP16.69■□□□□ 0.26
SMAD4-211ENST00000590499 UBAP1LF5GYI3 381 aa16.68■□□□□ 0.26
SMAD4-211ENST00000590499 TMEM121BQ9BXQ6 578 aaPredicted RBP16.67■□□□□ 0.26
SMAD4-211ENST00000590499 TBX22Q9Y458 520 aa16.67■□□□□ 0.26
SMAD4-211ENST00000590499 PPLO60437 1756 aa16.66■□□□□ 0.26
SMAD4-211ENST00000590499 ZNF326Q5BKZ1 582 aaKnown RBP16.65■□□□□ 0.26
SMAD4-211ENST00000590499 BCANQ96GW7 911 aa16.65■□□□□ 0.26
SMAD4-211ENST00000590499 PIK3R4Q99570 1358 aa16.64■□□□□ 0.26
SMAD4-211ENST00000590499 CCDC144AA2RUR9 1427 aa16.64■□□□□ 0.25
SMAD4-211ENST00000590499 SPATA31E1Q6ZUB1 1445 aa16.64■□□□□ 0.25
SMAD4-211ENST00000590499 HRCP23327 699 aa16.64■□□□□ 0.25
SMAD4-211ENST00000590499 MMRN1Q13201 1228 aa16.64■□□□□ 0.25
SMAD4-211ENST00000590499 TMEM94Q12767 1356 aa16.64■□□□□ 0.25
SMAD4-211ENST00000590499 PYGBP11216 843 aa16.63■□□□□ 0.25
SMAD4-211ENST00000590499 DCAF8Q5TAQ9 597 aa16.63■□□□□ 0.25
SMAD4-211ENST00000590499 SPNS2Q8IVW8 549 aa16.63■□□□□ 0.25
SMAD4-211ENST00000590499 SETD1AO15047 1707 aaKnown RBP16.62■□□□□ 0.25
SMAD4-211ENST00000590499 IFT172Q9UG01 1749 aa16.62■□□□□ 0.25
SMAD4-211ENST00000590499 TOM1O60784 492 aa16.62■□□□□ 0.25
SMAD4-211ENST00000590499 XRN1Q8IZH2 1706 aaKnown RBP16.62■□□□□ 0.25
SMAD4-211ENST00000590499 PTPRUQ92729 1446 aa16.62■□□□□ 0.25
SMAD4-211ENST00000590499 IFNLR1Q8IU57 520 aaPredicted RBP16.61■□□□□ 0.25
SMAD4-211ENST00000590499 RPGRIP1LQ68CZ1 1315 aa16.61■□□□□ 0.25
SMAD4-211ENST00000590499 SNPHO15079 494 aa16.6■□□□□ 0.25
SMAD4-211ENST00000590499 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.6■□□□□ 0.25
SMAD4-211ENST00000590499 PCDHB8Q9UN66 801 aa16.59■□□□□ 0.25
SMAD4-211ENST00000590499 PROSER2Q86WR7 435 aaPredicted RBP16.58■□□□□ 0.24
SMAD4-211ENST00000590499 METP08581 1390 aa16.58■□□□□ 0.24
SMAD4-211ENST00000590499 ANKRD30BQ9BXX2 1392 aa16.57■□□□□ 0.24
SMAD4-211ENST00000590499 MARVELD3Q96A59 401 aa16.57■□□□□ 0.24
SMAD4-211ENST00000590499 NCOA3Q9Y6Q9 1424 aa16.56■□□□□ 0.24
SMAD4-211ENST00000590499 VGFO15240 615 aaPredicted RBP16.56■□□□□ 0.24
SMAD4-211ENST00000590499 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
SMAD4-211ENST00000590499 PIP4K2BP78356 416 aa16.55■□□□□ 0.24
SMAD4-211ENST00000590499 AMOTL2Q9Y2J4 779 aa16.54■□□□□ 0.24
SMAD4-211ENST00000590499 PRAG1Q86YV5 1406 aa16.53■□□□□ 0.24
SMAD4-211ENST00000590499 ADGRF5Q8IZF2 1346 aa16.52■□□□□ 0.24
SMAD4-211ENST00000590499 RGL3Q3MIN7 710 aa16.52■□□□□ 0.24
SMAD4-211ENST00000590499 MSH6P52701 1360 aa16.51■□□□□ 0.23
SMAD4-211ENST00000590499 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.51■□□□□ 0.23
SMAD4-211ENST00000590499 HSPA1LP34931 641 aa16.51■□□□□ 0.23
SMAD4-211ENST00000590499 PIK3C2GO75747 1445 aa16.51■□□□□ 0.23
SMAD4-211ENST00000590499 MYOM2P54296 1465 aa16.5■□□□□ 0.23
SMAD4-211ENST00000590499 NRXN1Q9ULB1 1477 aa16.5■□□□□ 0.23
SMAD4-211ENST00000590499 PDCD7Q8N8D1 485 aaKnown RBP16.5■□□□□ 0.23
SMAD4-211ENST00000590499 SPOCK2Q92563 424 aa16.5■□□□□ 0.23
SMAD4-211ENST00000590499 FAM135BQ49AJ0 1406 aa16.5■□□□□ 0.23
SMAD4-211ENST00000590499 PTCH1Q13635 1447 aa16.49■□□□□ 0.23
SMAD4-211ENST00000590499 GSE1Q14687 1217 aa16.49■□□□□ 0.23
SMAD4-211ENST00000590499 ROBO1Q9Y6N7 1651 aa16.49■□□□□ 0.23
SMAD4-211ENST00000590499 ASXL1Q8IXJ9 1541 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 278.9 ms