RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ALKQ9UM73 1620 aa13.52□□□□□ -0.25
SMAD4-209ENST00000589941 SETD1AO15047 1707 aaKnown RBP13.52□□□□□ -0.25
SMAD4-209ENST00000589941 MYO5CQ9NQX4 1742 aa13.52□□□□□ -0.25
SMAD4-209ENST00000589941 MAP3K7O43318 606 aa13.51□□□□□ -0.25
SMAD4-209ENST00000589941 HSPA1LP34931 641 aa13.51□□□□□ -0.25
SMAD4-209ENST00000589941 PSEN2P49810 448 aa13.5□□□□□ -0.25
SMAD4-209ENST00000589941 C6orf132Q5T0Z8 1188 aa13.5□□□□□ -0.25
SMAD4-209ENST00000589941 SMYD5Q6GMV2 418 aa13.5□□□□□ -0.25
SMAD4-209ENST00000589941 CDHR5Q9HBB8 845 aa13.5□□□□□ -0.25
SMAD4-209ENST00000589941 KDM5CP41229 1560 aa13.49□□□□□ -0.25
SMAD4-209ENST00000589941 CDAN1Q8IWY9 1227 aa13.49□□□□□ -0.25
SMAD4-209ENST00000589941 KCNK17Q96T54 332 aa13.49□□□□□ -0.25
SMAD4-209ENST00000589941 REREQ9P2R6 1566 aa13.49□□□□□ -0.25
SMAD4-209ENST00000589941 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.48□□□□□ -0.25
SMAD4-209ENST00000589941 SCAPERQ9BY12 1400 aa13.47□□□□□ -0.25
SMAD4-209ENST00000589941 KRTAP3-3Q9BYR6 98 aa13.47□□□□□ -0.25
SMAD4-209ENST00000589941 KRTAP3-2Q9BYR7 98 aa13.47□□□□□ -0.25
SMAD4-209ENST00000589941 MROH2AA6NES4 1674 aa13.47□□□□□ -0.25
SMAD4-209ENST00000589941 ARHGAP33O14559 1287 aa13.46□□□□□ -0.25
SMAD4-209ENST00000589941 COL9A1P20849 921 aa13.46□□□□□ -0.25
SMAD4-209ENST00000589941 PTPREP23469 700 aa13.46□□□□□ -0.25
SMAD4-209ENST00000589941 DMRTA1Q5VZB9 504 aa13.46□□□□□ -0.25
SMAD4-209ENST00000589941 POLR1AO95602 1720 aaPredicted RBP13.46□□□□□ -0.25
SMAD4-209ENST00000589941 PBX2P40425 430 aa13.44□□□□□ -0.26
SMAD4-209ENST00000589941 CDK13Q14004 1512 aaKnown RBP13.44□□□□□ -0.26
SMAD4-209ENST00000589941 PRXQ9BXM0 1461 aa13.43□□□□□ -0.26
SMAD4-209ENST00000589941 KIF14Q15058 1648 aa13.43□□□□□ -0.26
SMAD4-209ENST00000589941 TRAPPC8Q9Y2L5 1435 aa13.43□□□□□ -0.26
SMAD4-209ENST00000589941 CEP170BQ9Y4F5 1589 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-209ENST00000589941 NUTM2FA1L443 756 aa13.42□□□□□ -0.26
SMAD4-209ENST00000589941 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
SMAD4-209ENST00000589941 NPDC1Q9NQX5 325 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-209ENST00000589941 TCOF1Q13428 1488 aaKnown RBP13.42□□□□□ -0.26
SMAD4-209ENST00000589941 CLTCQ00610 1675 aaKnown RBP13.41□□□□□ -0.26
SMAD4-209ENST00000589941 TULP1O00294 542 aaPredicted RBP13.41□□□□□ -0.26
SMAD4-209ENST00000589941 AGLP35573 1532 aa13.4□□□□□ -0.26
SMAD4-209ENST00000589941 PIP4K2BP78356 416 aa13.4□□□□□ -0.26
SMAD4-209ENST00000589941 NEURL4Q96JN8 1562 aa13.4□□□□□ -0.26
SMAD4-209ENST00000589941 PPP1R3GB7ZBB8 358 aa13.39□□□□□ -0.27
SMAD4-209ENST00000589941 ZNF518AQ6AHZ1 1483 aa13.39□□□□□ -0.27
SMAD4-209ENST00000589941 ITSN2Q9NZM3 1697 aa13.39□□□□□ -0.27
SMAD4-209ENST00000589941 KIDINS220Q9ULH0 1771 aa13.39□□□□□ -0.27
SMAD4-209ENST00000589941 PLA2R1Q13018 1463 aa13.38□□□□□ -0.27
SMAD4-209ENST00000589941 CDC42BPBQ9Y5S2 1711 aa13.38□□□□□ -0.27
SMAD4-209ENST00000589941 PLCH2O75038 1416 aa13.38□□□□□ -0.27
SMAD4-209ENST00000589941 GPR37O15354 613 aa13.37□□□□□ -0.27
SMAD4-209ENST00000589941 LSM11P83369 360 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMAD4-209ENST00000589941 PTGDRQ13258 359 aa13.37□□□□□ -0.27
SMAD4-209ENST00000589941 STRCP1A6NGW2 1772 aa13.37□□□□□ -0.27
SMAD4-209ENST00000589941 GPIHBP1Q8IV16 184 aa13.36□□□□□ -0.27
SMAD4-209ENST00000589941 ZBED2Q9BTP6 218 aa13.36□□□□□ -0.27
SMAD4-209ENST00000589941 PROX2Q3B8N5 592 aa13.35□□□□□ -0.27
SMAD4-209ENST00000589941 RGS17Q9UGC6 210 aaPredicted RBP13.35□□□□□ -0.27
SMAD4-209ENST00000589941 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
SMAD4-209ENST00000589941 NPATQ14207 1427 aa13.34□□□□□ -0.27
SMAD4-209ENST00000589941 ANKRD13DQ6ZTN6 518 aa13.34□□□□□ -0.27
SMAD4-209ENST00000589941 CPS1P31327 1500 aa13.34□□□□□ -0.27
SMAD4-209ENST00000589941 VWDEQ8N2E2 1590 aa13.33□□□□□ -0.28
SMAD4-209ENST00000589941 DNMT1P26358 1616 aaKnown RBP13.32□□□□□ -0.28
SMAD4-209ENST00000589941 ABCC1P33527 1531 aa13.31□□□□□ -0.28
SMAD4-209ENST00000589941 ARHGAP5Q13017 1502 aa13.31□□□□□ -0.28
SMAD4-209ENST00000589941 FAM198AQ9UFP1 575 aa13.31□□□□□ -0.28
SMAD4-209ENST00000589941 VPS9D1Q9Y2B5 631 aa13.31□□□□□ -0.28
SMAD4-209ENST00000589941 RNF17Q9BXT8 1623 aaKnown RBP13.31□□□□□ -0.28
SMAD4-209ENST00000589941 PLEKHD1A6NEE1 506 aa13.3□□□□□ -0.28
SMAD4-209ENST00000589941 FCHSD2O94868 740 aa13.3□□□□□ -0.28
SMAD4-209ENST00000589941 PRSS12P56730 875 aa13.3□□□□□ -0.28
SMAD4-209ENST00000589941 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
SMAD4-209ENST00000589941 CNTLNQ9NXG0 1405 aa13.3□□□□□ -0.28
SMAD4-209ENST00000589941 PREX2Q70Z35 1606 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 ADGRD1Q6QNK2 874 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 PADI6Q6TGC4 694 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 AFAP1Q8N556 730 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 SLC4A5Q9BY07 1137 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 PCDH10Q9P2E7 1040 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 TSKSQ9UJT2 592 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 MLH3Q9UHC1 1453 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 SHANK2Q9UPX8 1470 aa13.29□□□□□ -0.28
SMAD4-209ENST00000589941 FECHP22830 423 aa13.28□□□□□ -0.28
SMAD4-209ENST00000589941 XIRP1Q702N8 1843 aaKnown RBP13.27□□□□□ -0.28
SMAD4-209ENST00000589941 TRIM6-TRIM34B2RNG4 842 aa13.27□□□□□ -0.29
SMAD4-209ENST00000589941 TK2O00142 265 aa13.27□□□□□ -0.29
SMAD4-209ENST00000589941 ZC3H15Q8WU90 426 aaKnown RBP13.27□□□□□ -0.29
SMAD4-209ENST00000589941 TTC13Q8NBP0 860 aa13.26□□□□□ -0.29
SMAD4-209ENST00000589941 PTPRKQ15262 1439 aa13.25□□□□□ -0.29
SMAD4-209ENST00000589941 C3orf80F5H4A9 247 aa13.25□□□□□ -0.29
SMAD4-209ENST00000589941 HIC1Q14526 733 aa13.25□□□□□ -0.29
SMAD4-209ENST00000589941 SYNMO15061 1565 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 PLXNC1O60486 1568 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 GNPATO15228 680 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 HRO43593 1189 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 TOM1O60784 492 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 KIAA1468Q9P260 1216 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 CDC42BPAQ5VT25 1732 aa13.24□□□□□ -0.29
SMAD4-209ENST00000589941 FAM9AQ8IZU1 332 aaPredicted RBP13.23□□□□□ -0.29
SMAD4-209ENST00000589941 RBM27Q9P2N5 1060 aaKnown RBP13.23□□□□□ -0.29
SMAD4-209ENST00000589941 ZMYM3Q14202 1370 aa13.22□□□□□ -0.29
SMAD4-209ENST00000589941 POTEAQ6S8J7 498 aa13.22□□□□□ -0.29
SMAD4-209ENST00000589941 ESF1Q9H501 851 aaKnown RBP13.22□□□□□ -0.29
SMAD4-209ENST00000589941 A2ML1A8K2U0 1454 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms