RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	AMER1	Q5JTC6	1135 aa	Predicted RBP	20.89	■□□□□ 0.93
DDX39A-209	ENST00000589318	TECPR2	O15040	1411 aa		20.89	■□□□□ 0.93
DDX39A-209	ENST00000589318	TXNDC2	Q86VQ3	553 aa		20.88	■□□□□ 0.93
DDX39A-209	ENST00000589318	CPS1	P31327	1500 aa		20.88	■□□□□ 0.93
DDX39A-209	ENST00000589318	SETD1B	Q9UPS6	1966 aa	Known RBP	20.87	■□□□□ 0.93
DDX39A-209	ENST00000589318	CC2D1B	Q5T0F9	858 aa	Known RBP	20.87	■□□□□ 0.93
DDX39A-209	ENST00000589318	THEMIS	Q8N1K5	641 aa	Predicted RBP	20.87	■□□□□ 0.93
DDX39A-209	ENST00000589318	PLEKHH1	Q9ULM0	1364 aa		20.87	■□□□□ 0.93
DDX39A-209	ENST00000589318	POGK	Q9P215	609 aa		20.86	■□□□□ 0.93
DDX39A-209	ENST00000589318	KNSTRN	Q9Y448	316 aa		20.86	■□□□□ 0.93
DDX39A-209	ENST00000589318	NPC1L1	Q9UHC9	1359 aa		20.86	■□□□□ 0.93
DDX39A-209	ENST00000589318	BRD4	O60885	1362 aa	Predicted RBP	20.86	■□□□□ 0.93
DDX39A-209	ENST00000589318	CARD14	Q9BXL6	1004 aa		20.86	■□□□□ 0.93
DDX39A-209	ENST00000589318	MINK1	Q8N4C8	1332 aa	Predicted RBP	20.85	■□□□□ 0.93
DDX39A-209	ENST00000589318	EID1	Q9Y6B2	187 aa		20.85	■□□□□ 0.93
DDX39A-209	ENST00000589318	SLC12A5	Q9H2X9	1139 aa		20.84	■□□□□ 0.93
DDX39A-209	ENST00000589318	WAPL	Q7Z5K2	1190 aa		20.84	■□□□□ 0.93
DDX39A-209	ENST00000589318	FAM135B	Q49AJ0	1406 aa		20.83	■□□□□ 0.93
DDX39A-209	ENST00000589318	CABP2	Q9NPB3	220 aa		20.83	■□□□□ 0.93
DDX39A-209	ENST00000589318	FAM9B	Q8IZU0	186 aa		20.82	■□□□□ 0.92
DDX39A-209	ENST00000589318	SIRT1	Q96EB6	747 aa		20.82	■□□□□ 0.92
DDX39A-209	ENST00000589318	BCAN	Q96GW7	911 aa		20.82	■□□□□ 0.92
DDX39A-209	ENST00000589318	NLRP13	Q86W25	1043 aa		20.81	■□□□□ 0.92
DDX39A-209	ENST00000589318	DIP2A	Q14689	1571 aa		20.81	■□□□□ 0.92
DDX39A-209	ENST00000589318	USP32	Q8NFA0	1604 aa		20.81	■□□□□ 0.92
DDX39A-209	ENST00000589318	PTPRU	Q92729	1446 aa		20.8	■□□□□ 0.92
DDX39A-209	ENST00000589318	TMC1	Q8TDI8	760 aa		20.8	■□□□□ 0.92
DDX39A-209	ENST00000589318	PNISR	Q8TF01	805 aa	Known RBP	20.8	■□□□□ 0.92
DDX39A-209	ENST00000589318	SLC26A8	Q96RN1	970 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	ATAD2	Q6PL18	1390 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	NINL	Q9Y2I6	1382 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	NSD3	Q9BZ95	1437 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	SRPK2	P78362	688 aa	Known RBP	20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	ANKRD36B	Q8N2N9	1353 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	ROBO2	Q9HCK4	1378 aa		20.78	■□□□□ 0.92
DDX39A-209	ENST00000589318	TBX22	Q9Y458	520 aa		20.77	■□□□□ 0.92
DDX39A-209	ENST00000589318	HNRNPU	Q00839	825 aa	Known RBP eCLIP	20.76	■□□□□ 0.91
DDX39A-209	ENST00000589318	CDK19	Q9BWU1	502 aa		20.76	■□□□□ 0.91
DDX39A-209	ENST00000589318	CD163L1	Q9NR16	1453 aa		20.76	■□□□□ 0.91
DDX39A-209	ENST00000589318	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	20.75	■□□□□ 0.91
DDX39A-209	ENST00000589318	XRN1	Q8IZH2	1706 aa	Known RBP	20.74	■□□□□ 0.91
DDX39A-209	ENST00000589318	ADGRB2	O60241	1585 aa		20.73	■□□□□ 0.91
DDX39A-209	ENST00000589318	PPP2R1A	P30153	589 aa		20.73	■□□□□ 0.91
DDX39A-209	ENST00000589318	RBM19	Q9Y4C8	960 aa	Known RBP	20.73	■□□□□ 0.91
DDX39A-209	ENST00000589318		A0A1W2PP64	1363 aa		20.73	■□□□□ 0.91
DDX39A-209	ENST00000589318	PTCH1	Q13635	1447 aa		20.71	■□□□□ 0.91
DDX39A-209	ENST00000589318	WASL	O00401	505 aa	Predicted RBP	20.7	■□□□□ 0.91
DDX39A-209	ENST00000589318	NEFL	P07196	543 aa		20.68	■□□□□ 0.9
DDX39A-209	ENST00000589318	AMOTL2	Q9Y2J4	779 aa		20.68	■□□□□ 0.9
DDX39A-209	ENST00000589318	ANKLE2	Q86XL3	938 aa		20.68	■□□□□ 0.9
DDX39A-209	ENST00000589318	ERICH6	Q7L0X2	663 aa		20.67	■□□□□ 0.9
DDX39A-209	ENST00000589318	PIK3R4	Q99570	1358 aa		20.67	■□□□□ 0.9
DDX39A-209	ENST00000589318	CGNL1	Q0VF96	1302 aa		20.66	■□□□□ 0.9
DDX39A-209	ENST00000589318	ATP7B	P35670	1465 aa		20.66	■□□□□ 0.9
DDX39A-209	ENST00000589318	CABP1	Q9NZU7	370 aa		20.66	■□□□□ 0.9
DDX39A-209	ENST00000589318	CHD2	O14647	1828 aa	Known RBP	20.66	■□□□□ 0.9
DDX39A-209	ENST00000589318	ZBED9	Q6R2W3	1325 aa		20.65	■□□□□ 0.9
DDX39A-209	ENST00000589318	TERF2IP	Q9NYB0	399 aa		20.65	■□□□□ 0.9
DDX39A-209	ENST00000589318	FANCI	Q9NVI1	1328 aa		20.64	■□□□□ 0.9
DDX39A-209	ENST00000589318	NSD2	O96028	1365 aa		20.64	■□□□□ 0.9
DDX39A-209	ENST00000589318	ANKRD26	Q9UPS8	1709 aa		20.64	■□□□□ 0.89
DDX39A-209	ENST00000589318	TOPAZ1	Q8N9V7	1692 aa		20.63	■□□□□ 0.89
DDX39A-209	ENST00000589318	PPIP5K1	Q6PFW1	1433 aa		20.62	■□□□□ 0.89
DDX39A-209	ENST00000589318	FKBP8	Q14318	412 aa		20.62	■□□□□ 0.89
DDX39A-209	ENST00000589318	PRR36	Q9H6K5	1346 aa		20.62	■□□□□ 0.89
DDX39A-209	ENST00000589318	CPSF1	Q10570	1443 aa	Known RBP	20.62	■□□□□ 0.89
DDX39A-209	ENST00000589318	INSR	P06213	1382 aa		20.61	■□□□□ 0.89
DDX39A-209	ENST00000589318	CDC42BPG	Q6DT37	1551 aa		20.61	■□□□□ 0.89
DDX39A-209	ENST00000589318	KIF20B	Q96Q89	1820 aa		20.61	■□□□□ 0.89
DDX39A-209	ENST00000589318	AKAP12	Q02952	1782 aa		20.61	■□□□□ 0.89
DDX39A-209	ENST00000589318	NUDT16	Q96DE0	195 aa	Known RBP	20.61	■□□□□ 0.89
DDX39A-209	ENST00000589318	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	20.6	■□□□□ 0.89
DDX39A-209	ENST00000589318	MORC1	Q86VD1	984 aa		20.6	■□□□□ 0.89
DDX39A-209	ENST00000589318	MON2	Q7Z3U7	1717 aa		20.6	■□□□□ 0.89
DDX39A-209	ENST00000589318	NPHP4	O75161	1426 aa	Predicted RBP	20.59	■□□□□ 0.89
DDX39A-209	ENST00000589318	BLM	P54132	1417 aa	Predicted RBP	20.59	■□□□□ 0.89
DDX39A-209	ENST00000589318	KCNA6	P17658	529 aa		20.59	■□□□□ 0.89
DDX39A-209	ENST00000589318	NCKAP5L	Q9HCH0	1330 aa		20.59	■□□□□ 0.89
DDX39A-209	ENST00000589318	ITSN1	Q15811	1721 aa		20.58	■□□□□ 0.89
DDX39A-209	ENST00000589318	CCDC61	Q9Y6R9	512 aa		20.58	■□□□□ 0.88
DDX39A-209	ENST00000589318	PRKCSH	P14314	528 aa	Predicted RBP	20.57	■□□□□ 0.88
DDX39A-209	ENST00000589318	FYB1	O15117	783 aa		20.57	■□□□□ 0.88
DDX39A-209	ENST00000589318	POLR3A	O14802	1390 aa	Predicted RBP	20.56	■□□□□ 0.88
DDX39A-209	ENST00000589318	SHPRH	Q149N8	1683 aa		20.54	■□□□□ 0.88
DDX39A-209	ENST00000589318	EDC4	Q6P2E9	1401 aa	Known RBP	20.54	■□□□□ 0.88
DDX39A-209	ENST00000589318	GGNBP2	Q9H3C7	697 aa		20.54	■□□□□ 0.88
DDX39A-209	ENST00000589318	RGPD8	O14715	1765 aa	Predicted RBP	20.53	■□□□□ 0.88
DDX39A-209	ENST00000589318	TNNT2	P45379	298 aa	Predicted RBP	20.53	■□□□□ 0.88
DDX39A-209	ENST00000589318	ADAMTS8	Q9UP79	889 aa		20.53	■□□□□ 0.88
DDX39A-209	ENST00000589318	NALCN	Q8IZF0	1738 aa		20.53	■□□□□ 0.88
DDX39A-209	ENST00000589318	NKTR	P30414	1462 aa	Known RBP	20.53	■□□□□ 0.88
DDX39A-209	ENST00000589318	NRK	Q7Z2Y5	1582 aa		20.52	■□□□□ 0.88
DDX39A-209	ENST00000589318	KDM4F	A0A1W2PPD8	638 aa		20.52	■□□□□ 0.88
DDX39A-209	ENST00000589318	NWD1	Q149M9	1564 aa		20.51	■□□□□ 0.87
DDX39A-209	ENST00000589318	SENP3-EIF4A1	A0A087X0R7	540 aa		20.51	■□□□□ 0.87
DDX39A-209	ENST00000589318	FMN2	Q9NZ56	1722 aa		20.51	■□□□□ 0.87
DDX39A-209	ENST00000589318	PLEKHG3	A1L390	1219 aa		20.49	■□□□□ 0.87
DDX39A-209	ENST00000589318	WDR43	Q15061	677 aa	Known RBP eCLIP	20.49	■□□□□ 0.87
DDX39A-209	ENST00000589318	NUTM2F	A1L443	756 aa		20.48	■□□□□ 0.87
DDX39A-209	ENST00000589318	MTHFS	P49914	203 aa		20.48	■□□□□ 0.87

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms