RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 PPP1R3GB7ZBB8 358 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 BRD1O95696 1058 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 USP46P62068 366 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 MMRN1Q13201 1228 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 CFAP70Q5T0N1 1121 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 FOXD4L5Q5VV16 416 aaPredicted RBP12.87□□□□□ -0.35
VMP1-208ENST00000588617 FOXD4L4Q8WXT5 416 aaPredicted RBP12.87□□□□□ -0.35
VMP1-208ENST00000588617 USTQ9Y2C2 406 aa12.87□□□□□ -0.35
VMP1-208ENST00000588617 CTDSPL2Q05D32 466 aa12.86□□□□□ -0.35
VMP1-208ENST00000588617 KCNA1Q09470 495 aa12.86□□□□□ -0.35
VMP1-208ENST00000588617 BCL2L12Q9HB09 334 aa12.86□□□□□ -0.35
VMP1-208ENST00000588617 TRIM6-TRIM34B2RNG4 842 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 HOXA2O43364 376 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 PTPREP23469 700 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 VAC14Q08AM6 782 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 RSPH4AQ5TD94 716 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 PPP1R12CQ9BZL4 782 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 HMX1Q9NP08 348 aaPredicted RBP12.85□□□□□ -0.35
VMP1-208ENST00000588617 LHX6Q9UPM6 363 aa12.85□□□□□ -0.35
VMP1-208ENST00000588617 SMAPO00193 183 aa12.83□□□□□ -0.36
VMP1-208ENST00000588617 GCGRP47871 477 aa12.83□□□□□ -0.36
VMP1-208ENST00000588617 SRPK2P78362 688 aaKnown RBP12.83□□□□□ -0.36
VMP1-208ENST00000588617 TSC1Q92574 1164 aa12.83□□□□□ -0.36
VMP1-208ENST00000588617 TRIM34Q9BYJ4 488 aa12.83□□□□□ -0.36
VMP1-208ENST00000588617 RBM25P49756 843 aaKnown RBP12.82□□□□□ -0.36
VMP1-208ENST00000588617 HELBQ8NG08 1087 aaPredicted RBP12.82□□□□□ -0.36
VMP1-208ENST00000588617 PCDHGC3Q9UN70 934 aa12.82□□□□□ -0.36
VMP1-208ENST00000588617 PSDA5PKW4 1024 aaPredicted RBP12.8□□□□□ -0.36
VMP1-208ENST00000588617 PALM3A6NDB9 673 aaPredicted RBP12.8□□□□□ -0.36
VMP1-208ENST00000588617 LMOD1P29536 600 aaPredicted RBP12.8□□□□□ -0.36
VMP1-208ENST00000588617 GUCA2AQ02747 115 aa12.8□□□□□ -0.36
VMP1-208ENST00000588617 GPR37L1O60883 481 aa12.79□□□□□ -0.36
VMP1-208ENST00000588617 LRRN4Q8WUT4 740 aa12.79□□□□□ -0.36
VMP1-208ENST00000588617 ALG2Q9H553 416 aa12.79□□□□□ -0.36
VMP1-208ENST00000588617 CARNS1A5YM72 827 aa12.78□□□□□ -0.36
VMP1-208ENST00000588617 MTMR2Q13614 643 aa12.78□□□□□ -0.36
VMP1-208ENST00000588617 HLA-CQ95604 372 aa12.77□□□□□ -0.37
VMP1-208ENST00000588617 ZNF428Q96B54 188 aa12.77□□□□□ -0.37
VMP1-208ENST00000588617 TFIP11Q9UBB9 837 aaKnown RBP12.77□□□□□ -0.37
VMP1-208ENST00000588617 PROX2Q3B8N5 592 aa12.75□□□□□ -0.37
VMP1-208ENST00000588617 CDCA8Q53HL2 280 aa12.74□□□□□ -0.37
VMP1-208ENST00000588617 SLC10A3P09131 477 aa12.73□□□□□ -0.37
VMP1-208ENST00000588617 SOX11P35716 441 aa12.73□□□□□ -0.37
VMP1-208ENST00000588617 POTEEQ6S8J3 1075 aa12.73□□□□□ -0.37
VMP1-208ENST00000588617 EPS8L1Q8TE68 723 aa12.73□□□□□ -0.37
VMP1-208ENST00000588617 VRTNQ9H8Y1 702 aa12.73□□□□□ -0.37
VMP1-208ENST00000588617 CFAP99D6REC4 459 aa12.72□□□□□ -0.37
VMP1-208ENST00000588617 C6orf229H3BNL8 230 aa12.72□□□□□ -0.37
VMP1-208ENST00000588617 PRR7Q8TB68 274 aa12.72□□□□□ -0.37
VMP1-208ENST00000588617 IVNS1ABPQ9Y6Y0 642 aa12.72□□□□□ -0.37
VMP1-208ENST00000588617 PBX2P40425 430 aa12.71□□□□□ -0.37
VMP1-208ENST00000588617 SEMA3FQ13275 785 aa12.71□□□□□ -0.37
VMP1-208ENST00000588617 UCN2Q96RP3 112 aa12.71□□□□□ -0.37
VMP1-208ENST00000588617 ATG7O95352 703 aa12.7□□□□□ -0.38
VMP1-208ENST00000588617 LSM11P83369 360 aaKnown RBP eCLIP12.7□□□□□ -0.38
VMP1-208ENST00000588617 SWT1Q5T5J6 900 aaKnown RBP12.7□□□□□ -0.38
VMP1-208ENST00000588617 CCDC27Q2M243 656 aa12.69□□□□□ -0.38
VMP1-208ENST00000588617 KIAA1468Q9P260 1216 aa12.69□□□□□ -0.38
VMP1-208ENST00000588617 GRIPAP1Q4V328 841 aa12.68□□□□□ -0.38
VMP1-208ENST00000588617 AXIN2Q9Y2T1 843 aa12.68□□□□□ -0.38
VMP1-208ENST00000588617 E9PSI1 815 aa12.67□□□□□ -0.38
VMP1-208ENST00000588617 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
VMP1-208ENST00000588617 KCNK17Q96T54 332 aa12.67□□□□□ -0.38
VMP1-208ENST00000588617 NR6A1Q15406 480 aa12.66□□□□□ -0.38
VMP1-208ENST00000588617 ANKRD13DQ6ZTN6 518 aa12.66□□□□□ -0.38
VMP1-208ENST00000588617 PNMA1Q8ND90 353 aa12.66□□□□□ -0.38
VMP1-208ENST00000588617 MAFBQ9Y5Q3 323 aaPredicted RBP12.66□□□□□ -0.38
VMP1-208ENST00000588617 TMEM88BA6NKF7 163 aa12.65□□□□□ -0.38
VMP1-208ENST00000588617 HDGFP51858 240 aaKnown RBP12.65□□□□□ -0.38
VMP1-208ENST00000588617 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
VMP1-208ENST00000588617 SND1Q7KZF4 910 aaKnown RBP eCLIP12.64□□□□□ -0.39
VMP1-208ENST00000588617 KCNH8Q96L42 1107 aa12.64□□□□□ -0.39
VMP1-208ENST00000588617 SLC4A3P48751 1232 aa12.63□□□□□ -0.39
VMP1-208ENST00000588617 FUT2Q10981 343 aa12.63□□□□□ -0.39
VMP1-208ENST00000588617 SYMPKQ92797 1274 aaKnown RBP12.63□□□□□ -0.39
VMP1-208ENST00000588617 EIF4G2P78344 907 aaKnown RBP eCLIP12.62□□□□□ -0.39
VMP1-208ENST00000588617 ARHGAP33O14559 1287 aa12.61□□□□□ -0.39
VMP1-208ENST00000588617 MYT1LQ9UL68 1186 aa12.61□□□□□ -0.39
VMP1-208ENST00000588617 ATP9BO43861 1147 aa12.6□□□□□ -0.39
VMP1-208ENST00000588617 RNF166Q96A37 237 aaPredicted RBP12.6□□□□□ -0.39
VMP1-208ENST00000588617 PER1O15534 1290 aaPredicted RBP12.59□□□□□ -0.39
VMP1-208ENST00000588617 ZBED2Q9BTP6 218 aa12.59□□□□□ -0.39
VMP1-208ENST00000588617 SEPT9Q9UHD8 586 aaPredicted RBP12.59□□□□□ -0.39
VMP1-208ENST00000588617 AMOTL2Q9Y2J4 779 aa12.59□□□□□ -0.39
VMP1-208ENST00000588617 ATP6V1AP38606 617 aa12.58□□□□□ -0.4
VMP1-208ENST00000588617 B4GALNT3Q6L9W6 998 aa12.58□□□□□ -0.4
VMP1-208ENST00000588617 CFHP08603 1231 aa12.57□□□□□ -0.4
VMP1-208ENST00000588617 PSEN2P49810 448 aa12.57□□□□□ -0.4
VMP1-208ENST00000588617 DMRTA1Q5VZB9 504 aa12.55□□□□□ -0.4
VMP1-208ENST00000588617 RABGEF1Q9UJ41 708 aa12.55□□□□□ -0.4
VMP1-208ENST00000588617 NR1H3Q13133 447 aa12.54□□□□□ -0.4
VMP1-208ENST00000588617 KANK4Q5T7N3 995 aaPredicted RBP12.54□□□□□ -0.4
VMP1-208ENST00000588617 GNEQ9Y223 722 aaKnown RBP12.54□□□□□ -0.4
VMP1-208ENST00000588617 ADGRD1Q6QNK2 874 aa12.53□□□□□ -0.4
VMP1-208ENST00000588617 RETREG3Q86VR2 466 aa12.53□□□□□ -0.4
VMP1-208ENST00000588617 RNF40O75150 1001 aa12.51□□□□□ -0.41
VMP1-208ENST00000588617 ELOAQ14241 798 aaKnown RBP12.51□□□□□ -0.41
VMP1-208ENST00000588617 PIK3CDO00329 1044 aa12.5□□□□□ -0.41
VMP1-208ENST00000588617 FAM98CQ17RN3 349 aaKnown RBP12.5□□□□□ -0.41
VMP1-208ENST00000588617 TMEM164Q5U3C3 297 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms