RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 BRD4O60885 1362 aaPredicted RBP26.94■■□□□ 1.9
TRIM47-204ENST00000587339 SLC12A5Q9H2X9 1139 aa26.93■■□□□ 1.9
TRIM47-204ENST00000587339 CABP2Q9NPB3 220 aa26.93■■□□□ 1.9
TRIM47-204ENST00000587339 SRPK2P78362 688 aaKnown RBP26.92■■□□□ 1.9
TRIM47-204ENST00000587339 WAPLQ7Z5K2 1190 aa26.92■■□□□ 1.9
TRIM47-204ENST00000587339 NLRP13Q86W25 1043 aa26.92■■□□□ 1.9
TRIM47-204ENST00000587339 NPC1L1Q9UHC9 1359 aa26.91■■□□□ 1.9
TRIM47-204ENST00000587339 CARD14Q9BXL6 1004 aa26.9■■□□□ 1.9
TRIM47-204ENST00000587339 TECPR2O15040 1411 aa26.9■■□□□ 1.9
TRIM47-204ENST00000587339 HNRNPUQ00839 825 aaKnown RBP eCLIP26.89■■□□□ 1.9
TRIM47-204ENST00000587339 PLEKHH1Q9ULM0 1364 aa26.89■■□□□ 1.89
TRIM47-204ENST00000587339 SIRT1Q96EB6 747 aa26.88■■□□□ 1.89
TRIM47-204ENST00000587339 KNDC1Q76NI1 1749 aa26.88■■□□□ 1.89
TRIM47-204ENST00000587339 MED14O60244 1454 aa26.88■■□□□ 1.89
TRIM47-204ENST00000587339 SLC26A8Q96RN1 970 aa26.88■■□□□ 1.89
TRIM47-204ENST00000587339 FAM135BQ49AJ0 1406 aa26.88■■□□□ 1.89
TRIM47-204ENST00000587339 ATAD2Q6PL18 1390 aa26.87■■□□□ 1.89
TRIM47-204ENST00000587339 NINLQ9Y2I6 1382 aa26.86■■□□□ 1.89
TRIM47-204ENST00000587339 CPS1P31327 1500 aa26.86■■□□□ 1.89
TRIM47-204ENST00000587339 PNISRQ8TF01 805 aaKnown RBP26.85■■□□□ 1.89
TRIM47-204ENST00000587339 CDK19Q9BWU1 502 aa26.85■■□□□ 1.89
TRIM47-204ENST00000587339 ZNF142P52746 1687 aaPredicted RBP26.85■■□□□ 1.89
TRIM47-204ENST00000587339 TBX22Q9Y458 520 aa26.84■■□□□ 1.89
TRIM47-204ENST00000587339 ANKRD36BQ8N2N9 1353 aa26.83■■□□□ 1.89
TRIM47-204ENST00000587339 NSD3Q9BZ95 1437 aa26.83■■□□□ 1.89
TRIM47-204ENST00000587339 SETD1BQ9UPS6 1966 aaKnown RBP26.82■■□□□ 1.88
TRIM47-204ENST00000587339 DIP2AQ14689 1571 aa26.8■■□□□ 1.88
TRIM47-204ENST00000587339 ROBO2Q9HCK4 1378 aa26.79■■□□□ 1.88
TRIM47-204ENST00000587339 ANKLE2Q86XL3 938 aa26.78■■□□□ 1.88
TRIM47-204ENST00000587339 PPP2R1AP30153 589 aa26.77■■□□□ 1.88
TRIM47-204ENST00000587339 PTPRUQ92729 1446 aa26.76■■□□□ 1.87
TRIM47-204ENST00000587339 WASLO00401 505 aaPredicted RBP26.76■■□□□ 1.87
TRIM47-204ENST00000587339 SCAF1Q9H7N4 1312 aaKnown RBP26.76■■□□□ 1.87
TRIM47-204ENST00000587339 TERF2IPQ9NYB0 399 aa26.75■■□□□ 1.87
TRIM47-204ENST00000587339 CGNL1Q0VF96 1302 aa26.75■■□□□ 1.87
TRIM47-204ENST00000587339 AMOTL2Q9Y2J4 779 aa26.75■■□□□ 1.87
TRIM47-204ENST00000587339 USP32Q8NFA0 1604 aa26.74■■□□□ 1.87
TRIM47-204ENST00000587339 A0A1W2PP64 1363 aa26.74■■□□□ 1.87
TRIM47-204ENST00000587339 GTF3C3Q9Y5Q9 886 aa26.74■■□□□ 1.87
TRIM47-204ENST00000587339 CABP1Q9NZU7 370 aa26.72■■□□□ 1.87
TRIM47-204ENST00000587339 HDGFL2Q7Z4V5 671 aaPredicted RBP26.69■■□□□ 1.86
TRIM47-204ENST00000587339 PIK3R4Q99570 1358 aa26.69■■□□□ 1.86
TRIM47-204ENST00000587339 PTCH1Q13635 1447 aa26.69■■□□□ 1.86
TRIM47-204ENST00000587339 CD163L1Q9NR16 1453 aa26.69■■□□□ 1.86
TRIM47-204ENST00000587339 ZBED9Q6R2W3 1325 aa26.69■■□□□ 1.86
TRIM47-204ENST00000587339 MORC1Q86VD1 984 aa26.68■■□□□ 1.86
TRIM47-204ENST00000587339 NSD2O96028 1365 aa26.67■■□□□ 1.86
TRIM47-204ENST00000587339 ADGRB2O60241 1585 aa26.66■■□□□ 1.86
TRIM47-204ENST00000587339 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.65■■□□□ 1.86
TRIM47-204ENST00000587339 ATP7BP35670 1465 aa26.65■■□□□ 1.86
TRIM47-204ENST00000587339 NUDT16Q96DE0 195 aaKnown RBP26.65■■□□□ 1.86
TRIM47-204ENST00000587339 PPIP5K1Q6PFW1 1433 aa26.63■■□□□ 1.85
TRIM47-204ENST00000587339 XRN1Q8IZH2 1706 aaKnown RBP26.63■■□□□ 1.85
TRIM47-204ENST00000587339 CCDC61Q9Y6R9 512 aa26.63■■□□□ 1.85
TRIM47-204ENST00000587339 KCNA6P17658 529 aa26.61■■□□□ 1.85
TRIM47-204ENST00000587339 TNNT2P45379 298 aaPredicted RBP26.59■■□□□ 1.85
TRIM47-204ENST00000587339 NPHP4O75161 1426 aaPredicted RBP26.58■■□□□ 1.85
TRIM47-204ENST00000587339 INSRP06213 1382 aa26.58■■□□□ 1.85
TRIM47-204ENST00000587339 WDR43Q15061 677 aaKnown RBP eCLIP26.57■■□□□ 1.84
TRIM47-204ENST00000587339 PRR36Q9H6K5 1346 aa26.57■■□□□ 1.84
TRIM47-204ENST00000587339 CPSF1Q10570 1443 aaKnown RBP26.56■■□□□ 1.84
TRIM47-204ENST00000587339 FYB1O15117 783 aa26.56■■□□□ 1.84
TRIM47-204ENST00000587339 NCKAP5LQ9HCH0 1330 aa26.56■■□□□ 1.84
TRIM47-204ENST00000587339 GGNBP2Q9H3C7 697 aa26.55■■□□□ 1.84
TRIM47-204ENST00000587339 ADAMTS8Q9UP79 889 aa26.54■■□□□ 1.84
TRIM47-204ENST00000587339 CDC42BPGQ6DT37 1551 aa26.54■■□□□ 1.84
TRIM47-204ENST00000587339 CHD2O14647 1828 aaKnown RBP26.53■■□□□ 1.84
TRIM47-204ENST00000587339 POLR3AO14802 1390 aaPredicted RBP26.53■■□□□ 1.84
TRIM47-204ENST00000587339 BLMP54132 1417 aaPredicted RBP26.53■■□□□ 1.84
TRIM47-204ENST00000587339 EDC4Q6P2E9 1401 aaKnown RBP26.51■■□□□ 1.83
TRIM47-204ENST00000587339 NUTM2FA1L443 756 aa26.51■■□□□ 1.83
TRIM47-204ENST00000587339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.51■■□□□ 1.83
TRIM47-204ENST00000587339 SENP3-EIF4A1A0A087X0R7 540 aa26.5■■□□□ 1.83
TRIM47-204ENST00000587339 ZNF692Q9BU19 519 aaPredicted RBP26.5■■□□□ 1.83
TRIM47-204ENST00000587339 ANKRD26Q9UPS8 1709 aa26.49■■□□□ 1.83
TRIM47-204ENST00000587339 MTHFSP49914 203 aa26.49■■□□□ 1.83
TRIM47-204ENST00000587339 TOPAZ1Q8N9V7 1692 aa26.47■■□□□ 1.83
TRIM47-204ENST00000587339 KIF20BQ96Q89 1820 aa26.47■■□□□ 1.83
TRIM47-204ENST00000587339 PLEKHG3A1L390 1219 aa26.46■■□□□ 1.83
TRIM47-204ENST00000587339 ITSN1Q15811 1721 aa26.46■■□□□ 1.83
TRIM47-204ENST00000587339 CFAP53Q96M91 514 aa26.45■■□□□ 1.83
TRIM47-204ENST00000587339 MON2Q7Z3U7 1717 aa26.45■■□□□ 1.82
TRIM47-204ENST00000587339 KDM4FA0A1W2PPD8 638 aa26.44■■□□□ 1.82
TRIM47-204ENST00000587339 AKAP12Q02952 1782 aa26.44■■□□□ 1.82
TRIM47-204ENST00000587339 ACEP12821 1306 aa26.44■■□□□ 1.82
TRIM47-204ENST00000587339 SALL2Q9Y467 1007 aaPredicted RBP26.41■■□□□ 1.82
TRIM47-204ENST00000587339 NKTRP30414 1462 aaKnown RBP26.41■■□□□ 1.82
TRIM47-204ENST00000587339 ANKARQ7Z5J8 1434 aa26.4■■□□□ 1.82
TRIM47-204ENST00000587339 NME9Q86XW9 330 aa26.39■■□□□ 1.82
TRIM47-204ENST00000587339 RBM33Q96EV2 1170 aaKnown RBP26.37■■□□□ 1.81
TRIM47-204ENST00000587339 NALCNQ8IZF0 1738 aa26.37■■□□□ 1.81
TRIM47-204ENST00000587339 SMG6Q86US8 1419 aaKnown RBP26.37■■□□□ 1.81
TRIM47-204ENST00000587339 USP6P35125 1406 aa26.37■■□□□ 1.81
TRIM47-204ENST00000587339 SHPRHQ149N8 1683 aa26.36■■□□□ 1.81
TRIM47-204ENST00000587339 PMFBP1Q8TBY8 1022 aa26.36■■□□□ 1.81
TRIM47-204ENST00000587339 NWD1Q149M9 1564 aa26.36■■□□□ 1.81
TRIM47-204ENST00000587339 FMN2Q9NZ56 1722 aa26.36■■□□□ 1.81
TRIM47-204ENST00000587339 HSPA2P54652 639 aa26.35■■□□□ 1.81
TRIM47-204ENST00000587339 COG3Q96JB2 828 aa26.35■■□□□ 1.81
TRIM47-204ENST00000587339 ADGRL3Q9HAR2 1447 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms