RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.6□□□□□ -1.83
CHD9-218ENST00000566029 HMGN5P82970 282 aaKnown RBP3.6□□□□□ -1.83
CHD9-218ENST00000566029 SNAPC4Q5SXM2 1469 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 SSFA2P28290 1259 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 RAB3GAP1Q15042 981 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 CAPN2P17655 700 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 NASPP49321 788 aaPredicted RBP3.6□□□□□ -1.83
CHD9-218ENST00000566029 IRX5P78411 483 aaPredicted RBP3.6□□□□□ -1.83
CHD9-218ENST00000566029 ZNF608Q9ULD9 1512 aaPredicted RBP3.59□□□□□ -1.83
CHD9-218ENST00000566029 TEX2Q8IWB9 1127 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 PDE3AQ14432 1141 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 NOC3LQ8WTT2 800 aaKnown RBP3.59□□□□□ -1.83
CHD9-218ENST00000566029 GBP4Q96PP9 640 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 TULP2O00295 520 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 SLFN14P0C7P3 912 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 CBX1P83916 185 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 GRIN2BQ13224 1484 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 VGLL3A8MV65 326 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 NOL8Q76FK4 1167 aaKnown RBP3.59□□□□□ -1.83
CHD9-218ENST00000566029 PDILTQ8N807 584 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 C22orf23Q9BZE7 217 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 NGEFQ8N5V2 710 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 PRIMPOLQ96LW4 560 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 KDM2AQ9Y2K7 1162 aa3.59□□□□□ -1.83
CHD9-218ENST00000566029 RGS22Q8NE09 1264 aa3.59□□□□□ -1.84
CHD9-218ENST00000566029 NBPF1Q3BBV0 1214 aa3.59□□□□□ -1.84
CHD9-218ENST00000566029 CREBRFQ8IUR6 639 aa3.59□□□□□ -1.84
CHD9-218ENST00000566029 ANKRD7Q92527 254 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 FAM53CQ9NYF3 392 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 GPRASP1Q5JY77 1395 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 CC2D2AQ9P2K1 1620 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 LMBRD1Q9NUN5 540 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 EFCAB5A4FU69 1503 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 HSP90AB3PQ58FF7 597 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 RWDD1Q9H446 243 aaPredicted RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 PLEKHD1A6NEE1 506 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 DMRT2Q9Y5R5 561 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 BAG4O95429 457 aaKnown RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 PCF11O94913 1555 aaKnown RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 NPM1P06748 294 aaKnown RBP eCLIP3.58□□□□□ -1.84
CHD9-218ENST00000566029 FAM193AP78312 1265 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 ESF1Q9H501 851 aaKnown RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 CGNQ9P2M7 1197 aaKnown RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 ANKRD30AQ9BXX3 1397 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 CYP2E1P05181 493 aaPredicted RBP3.58□□□□□ -1.84
CHD9-218ENST00000566029 SYCP1Q15431 976 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 SPTLC3Q9NUV7 552 aa3.58□□□□□ -1.84
CHD9-218ENST00000566029 KIAA2012Q0VF49 1180 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 JARID2Q92833 1246 aaPredicted RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 TNNQ9UQP3 1299 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 CARMIL2Q6F5E8 1435 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 PSEN1P49768 467 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 SPINK5Q9NQ38 1064 aaPredicted RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 KCNJ4P48050 445 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 HSCBQ8IWL3 235 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 PMFBP1Q8TBY8 1022 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 FEZ1Q99689 392 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 THOC2Q8NI27 1593 aaKnown RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 YY1AP1Q9H869 796 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 PCDHB15Q9Y5E8 787 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 BRD2P25440 801 aaKnown RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 PDCL2Q8N4E4 241 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 TSPYL1Q9H0U9 437 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 BCL2L12Q9HB09 334 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 OGFRQ9NZT2 677 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 GAS2L2Q8NHY3 880 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 CLASP1Q7Z460 1538 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 BCAR3O75815 825 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 EPRSP07814 1512 aaKnown RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 MSNP26038 577 aaKnown RBP3.57□□□□□ -1.84
CHD9-218ENST00000566029 PANK1Q8TE04 598 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 ARHGEF12Q9NZN5 1544 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 KDM4AO75164 1064 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 POLD1P28340 1107 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 CHIC2Q9UKJ5 165 aa3.57□□□□□ -1.84
CHD9-218ENST00000566029 ABCC5O15440 1437 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 SECISBP2LQ93073 1101 aaKnown RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 COG6Q9Y2V7 657 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 ITSN2Q9NZM3 1697 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 HOXA7P31268 230 aaPredicted RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 ABCC2Q92887 1545 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 CAMSAP2Q08AD1 1489 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 PTPRGP23470 1445 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 FAM135AQ9P2D6 1515 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 NOLC1Q14978 699 aaKnown RBP eCLIP3.56□□□□□ -1.84
CHD9-218ENST00000566029 EFCC1Q9HA90 598 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 BIVM-ERCC5R4GMW8 1640 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 DAPK1P53355 1430 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 FOXD4L5Q5VV16 416 aaPredicted RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 FOXD4L4Q8WXT5 416 aaPredicted RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 PPP2R1AP30153 589 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 IRX3P78415 501 aaPredicted RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 CCAR1Q8IX12 1150 aaKnown RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 GPATCH11Q8N954 259 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 PSMD1Q99460 953 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 UGGT2Q9NYU1 1516 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 PIK3C2GO75747 1445 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 ZBTB22O15209 634 aa3.56□□□□□ -1.84
CHD9-218ENST00000566029 NCBP1Q09161 790 aaKnown RBP3.56□□□□□ -1.84
CHD9-218ENST00000566029 MORC2Q9Y6X9 1032 aaPredicted RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms