RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 UBAP1LF5GYI3 381 aa12.15□□□□□ -0.46
PSEN1-209ENST00000553855 KCNA6P17658 529 aa12.15□□□□□ -0.46
PSEN1-209ENST00000553855 KIF1BO60333 1816 aa12.15□□□□□ -0.46
PSEN1-209ENST00000553855 TOM1O60784 492 aa12.14□□□□□ -0.47
PSEN1-209ENST00000553855 PROSER2Q86WR7 435 aaPredicted RBP12.13□□□□□ -0.47
PSEN1-209ENST00000553855 MYO5BQ9ULV0 1848 aa12.12□□□□□ -0.47
PSEN1-209ENST00000553855 PIK3R4Q99570 1358 aa12.12□□□□□ -0.47
PSEN1-209ENST00000553855 DIP2AQ14689 1571 aa12.11□□□□□ -0.47
PSEN1-209ENST00000553855 ANKRD30BQ9BXX2 1392 aa12.11□□□□□ -0.47
PSEN1-209ENST00000553855 CHADLQ6NUI6 762 aa12.11□□□□□ -0.47
PSEN1-209ENST00000553855 C14orf37Q86TY3 774 aa12.11□□□□□ -0.47
PSEN1-209ENST00000553855 TAOK2Q9UL54 1235 aa12.11□□□□□ -0.47
PSEN1-209ENST00000553855 NEXMIFQ5QGS0 1516 aa12.09□□□□□ -0.47
PSEN1-209ENST00000553855 LRRC7Q96NW7 1537 aa12.08□□□□□ -0.48
PSEN1-209ENST00000553855 AMOTL2Q9Y2J4 779 aa12.08□□□□□ -0.48
PSEN1-209ENST00000553855 ADAMTS13Q76LX8 1427 aa12.08□□□□□ -0.48
PSEN1-209ENST00000553855 NKTRP30414 1462 aaKnown RBP12.08□□□□□ -0.48
PSEN1-209ENST00000553855 PIP4K2BP78356 416 aa12.07□□□□□ -0.48
PSEN1-209ENST00000553855 STAC3Q96MF2 364 aa12.07□□□□□ -0.48
PSEN1-209ENST00000553855 MSH6P52701 1360 aa12.06□□□□□ -0.48
PSEN1-209ENST00000553855 TMEM94Q12767 1356 aa12.06□□□□□ -0.48
PSEN1-209ENST00000553855 SETBP1Q9Y6X0 1596 aa12.06□□□□□ -0.48
PSEN1-209ENST00000553855 SPATA31E1Q6ZUB1 1445 aa12.06□□□□□ -0.48
PSEN1-209ENST00000553855 PRKCSHP14314 528 aaPredicted RBP12.06□□□□□ -0.48
PSEN1-209ENST00000553855 TSHZ2Q9NRE2 1034 aa12.06□□□□□ -0.48
PSEN1-209ENST00000553855 GSE1Q14687 1217 aa12.04□□□□□ -0.48
PSEN1-209ENST00000553855 DCAF11Q8TEB1 546 aa12.04□□□□□ -0.48
PSEN1-209ENST00000553855 ADGRF5Q8IZF2 1346 aa12.04□□□□□ -0.48
PSEN1-209ENST00000553855 NCOA3Q9Y6Q9 1424 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 ATF3P18847 181 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 HS6ST3Q8IZP7 471 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 RBM33Q96EV2 1170 aaKnown RBP12.03□□□□□ -0.48
PSEN1-209ENST00000553855 CREBZFQ9NS37 354 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 NWD1Q149M9 1564 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 METP08581 1390 aa12.03□□□□□ -0.48
PSEN1-209ENST00000553855 STRCP1A6NGW2 1772 aa12.01□□□□□ -0.49
PSEN1-209ENST00000553855 PPLO60437 1756 aa12.01□□□□□ -0.49
PSEN1-209ENST00000553855 CADPS2Q86UW7 1296 aa12.01□□□□□ -0.49
PSEN1-209ENST00000553855 C19orf44Q9H6X5 657 aa12.01□□□□□ -0.49
PSEN1-209ENST00000553855 ALKQ9UM73 1620 aa12□□□□□ -0.49
PSEN1-209ENST00000553855 CHD2O14647 1828 aaKnown RBP12□□□□□ -0.49
PSEN1-209ENST00000553855 NEUROD1Q13562 356 aa12□□□□□ -0.49
PSEN1-209ENST00000553855 PCGF6Q9BYE7 350 aa12□□□□□ -0.49
PSEN1-209ENST00000553855 STK26Q9P289 416 aa12□□□□□ -0.49
PSEN1-209ENST00000553855 DHX57Q6P158 1386 aaKnown RBP12□□□□□ -0.49
PSEN1-209ENST00000553855 MYOM2P54296 1465 aa12□□□□□ -0.49
PSEN1-209ENST00000553855 NUBP1P53384 320 aa11.99□□□□□ -0.49
PSEN1-209ENST00000553855 C14orf93Q9H972 538 aaKnown RBP11.99□□□□□ -0.49
PSEN1-209ENST00000553855 FARP1Q9Y4F1 1045 aaPredicted RBP11.99□□□□□ -0.49
PSEN1-209ENST00000553855 PTPRUQ92729 1446 aa11.99□□□□□ -0.49
PSEN1-209ENST00000553855 NRXN3Q9Y4C0 1643 aa11.99□□□□□ -0.49
PSEN1-209ENST00000553855 PIK3C2GO75747 1445 aa11.98□□□□□ -0.49
PSEN1-209ENST00000553855 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
PSEN1-209ENST00000553855 CFAP70Q5T0N1 1121 aa11.97□□□□□ -0.49
PSEN1-209ENST00000553855 TMEM132EQ6IEE7 984 aa11.97□□□□□ -0.49
PSEN1-209ENST00000553855 SLAIN2Q9P270 581 aa11.97□□□□□ -0.49
PSEN1-209ENST00000553855 PTCH1Q13635 1447 aa11.96□□□□□ -0.49
PSEN1-209ENST00000553855 LRPPRCP42704 1394 aaKnown RBP11.96□□□□□ -0.49
PSEN1-209ENST00000553855 HAX1O00165 279 aa11.96□□□□□ -0.49
PSEN1-209ENST00000553855 IFT172Q9UG01 1749 aa11.95□□□□□ -0.5
PSEN1-209ENST00000553855 SIN3AQ96ST3 1273 aa11.95□□□□□ -0.5
PSEN1-209ENST00000553855 POGKQ9P215 609 aa11.95□□□□□ -0.5
PSEN1-209ENST00000553855 LAMC1P11047 1609 aa11.94□□□□□ -0.5
PSEN1-209ENST00000553855 NRXN1Q9ULB1 1477 aa11.94□□□□□ -0.5
PSEN1-209ENST00000553855 XRN1Q8IZH2 1706 aaKnown RBP11.94□□□□□ -0.5
PSEN1-209ENST00000553855 DCCP43146 1447 aa11.94□□□□□ -0.5
PSEN1-209ENST00000553855 FAM135BQ49AJ0 1406 aa11.94□□□□□ -0.5
PSEN1-209ENST00000553855 YTHDC2Q9H6S0 1430 aaKnown RBP11.94□□□□□ -0.5
PSEN1-209ENST00000553855 TONSLQ96HA7 1378 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 ABCC11Q96J66 1382 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 HSPA1LP34931 641 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 TPRNQ4KMQ1 711 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 SIRT1Q96EB6 747 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 ADGRL3Q9HAR2 1447 aa11.93□□□□□ -0.5
PSEN1-209ENST00000553855 ROBO2Q9HCK4 1378 aa11.92□□□□□ -0.5
PSEN1-209ENST00000553855 DCAF8Q5TAQ9 597 aa11.92□□□□□ -0.5
PSEN1-209ENST00000553855 RIOK3O14730 519 aaKnown RBP11.91□□□□□ -0.5
PSEN1-209ENST00000553855 L3MBTL2Q969R5 705 aa11.91□□□□□ -0.5
PSEN1-209ENST00000553855 TRAK1Q9UPV9 953 aa11.91□□□□□ -0.5
PSEN1-209ENST00000553855 PRAG1Q86YV5 1406 aa11.91□□□□□ -0.5
PSEN1-209ENST00000553855 XIRP1Q702N8 1843 aaKnown RBP11.9□□□□□ -0.5
PSEN1-209ENST00000553855 TECPR2O15040 1411 aa11.9□□□□□ -0.5
PSEN1-209ENST00000553855 WAPLQ7Z5K2 1190 aa11.9□□□□□ -0.5
PSEN1-209ENST00000553855 SETD1AO15047 1707 aaKnown RBP11.89□□□□□ -0.51
PSEN1-209ENST00000553855 SAFB2Q14151 953 aaKnown RBP eCLIP11.89□□□□□ -0.51
PSEN1-209ENST00000553855 PRAM1Q96QH2 718 aa11.89□□□□□ -0.51
PSEN1-209ENST00000553855 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.89□□□□□ -0.51
PSEN1-209ENST00000553855 FAM212AQ96EL1 285 aa11.88□□□□□ -0.51
PSEN1-209ENST00000553855 CCER1Q8TC90 406 aaPredicted RBP11.87□□□□□ -0.51
PSEN1-209ENST00000553855 CLSPNQ9HAW4 1339 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 ASXL1Q8IXJ9 1541 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 ESCO1Q5FWF5 840 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 BRINP3Q76B58 766 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 ROBO1Q9Y6N7 1651 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 KNDC1Q76NI1 1749 aa11.86□□□□□ -0.51
PSEN1-209ENST00000553855 EIF3AQ14152 1382 aaKnown RBP11.85□□□□□ -0.51
PSEN1-209ENST00000553855 DLC1Q96QB1 1528 aa11.85□□□□□ -0.51
PSEN1-209ENST00000553855 MST1RQ04912 1400 aa11.85□□□□□ -0.51
PSEN1-209ENST00000553855 ROCK2O75116 1388 aaKnown RBP11.84□□□□□ -0.51
PSEN1-209ENST00000553855 PLEKHH1Q9ULM0 1364 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms