RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 PDE4DQ08499 809 aa11.22□□□□□ -0.61
ATXN3-223ENST00000553686 NR1I2O75469 434 aa11.21□□□□□ -0.61
ATXN3-223ENST00000553686 GIGYF2Q6Y7W6 1299 aaKnown RBP11.21□□□□□ -0.61
ATXN3-223ENST00000553686 NKX2-3Q8TAU0 364 aa11.21□□□□□ -0.61
ATXN3-223ENST00000553686 SCUBE3Q8IX30 993 aa11.2□□□□□ -0.62
ATXN3-223ENST00000553686 PARP9Q8IXQ6 854 aa11.2□□□□□ -0.62
ATXN3-223ENST00000553686 KDM4AO75164 1064 aa11.19□□□□□ -0.62
ATXN3-223ENST00000553686 ABCC8Q09428 1581 aa11.19□□□□□ -0.62
ATXN3-223ENST00000553686 TPRNQ4KMQ1 711 aa11.18□□□□□ -0.62
ATXN3-223ENST00000553686 GRIPAP1Q4V328 841 aa11.18□□□□□ -0.62
ATXN3-223ENST00000553686 MORN1Q5T089 497 aa11.18□□□□□ -0.62
ATXN3-223ENST00000553686 A0A0G2JS52 829 aa11.17□□□□□ -0.62
ATXN3-223ENST00000553686 NUTM1Q86Y26 1132 aa11.17□□□□□ -0.62
ATXN3-223ENST00000553686 TOPBP1Q92547 1522 aa11.15□□□□□ -0.62
ATXN3-223ENST00000553686 BEGAINQ9BUH8 593 aa11.15□□□□□ -0.62
ATXN3-223ENST00000553686 SLC27A5Q9Y2P5 690 aa11.15□□□□□ -0.62
ATXN3-223ENST00000553686 GAPVD1Q14C86 1478 aa11.14□□□□□ -0.63
ATXN3-223ENST00000553686 MS4A1P11836 297 aa11.14□□□□□ -0.63
ATXN3-223ENST00000553686 USP46P62068 366 aa11.14□□□□□ -0.63
ATXN3-223ENST00000553686 EIF4G3O43432 1585 aaKnown RBP11.14□□□□□ -0.63
ATXN3-223ENST00000553686 TLL1O43897 1013 aa11.12□□□□□ -0.63
ATXN3-223ENST00000553686 PPP1R18Q6NYC8 613 aa11.12□□□□□ -0.63
ATXN3-223ENST00000553686 SPIRE2Q8WWL2 714 aa11.11□□□□□ -0.63
ATXN3-223ENST00000553686 TDRD9Q8NDG6 1382 aaKnown RBP11.11□□□□□ -0.63
ATXN3-223ENST00000553686 SPSB2Q99619 263 aa11.1□□□□□ -0.63
ATXN3-223ENST00000553686 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.1□□□□□ -0.63
ATXN3-223ENST00000553686 HOXA2O43364 376 aa11.09□□□□□ -0.63
ATXN3-223ENST00000553686 FMNL1O95466 1100 aaPredicted RBP11.09□□□□□ -0.63
ATXN3-223ENST00000553686 ADH1BP00325 375 aa11.09□□□□□ -0.63
ATXN3-223ENST00000553686 HLA-CQ95604 372 aa11.09□□□□□ -0.63
ATXN3-223ENST00000553686 THAP11Q96EK4 314 aa11.09□□□□□ -0.63
ATXN3-223ENST00000553686 CLASP1Q7Z460 1538 aa11.09□□□□□ -0.63
ATXN3-223ENST00000553686 GGCXP38435 758 aa11.08□□□□□ -0.64
ATXN3-223ENST00000553686 BRICD5Q6PL45 260 aa11.08□□□□□ -0.64
ATXN3-223ENST00000553686 FBXO41Q8TF61 875 aa11.08□□□□□ -0.64
ATXN3-223ENST00000553686 SALL2Q9Y467 1007 aaPredicted RBP11.08□□□□□ -0.64
ATXN3-223ENST00000553686 WIZO95785 1651 aa11.08□□□□□ -0.64
ATXN3-223ENST00000553686 SYNJ1O43426 1573 aa11.07□□□□□ -0.64
ATXN3-223ENST00000553686 CHD1O14646 1710 aa11.07□□□□□ -0.64
ATXN3-223ENST00000553686 Q3C1V9 767 aa11.07□□□□□ -0.64
ATXN3-223ENST00000553686 GPBP1L1Q9HC44 474 aaPredicted RBP11.07□□□□□ -0.64
ATXN3-223ENST00000553686 GUCA2AQ02747 115 aa11.06□□□□□ -0.64
ATXN3-223ENST00000553686 FAM69CQ0P6D2 419 aa11.06□□□□□ -0.64
ATXN3-223ENST00000553686 TBC1D2Q9BYX2 928 aa11.06□□□□□ -0.64
ATXN3-223ENST00000553686 SLC6A16Q9GZN6 736 aa11.06□□□□□ -0.64
ATXN3-223ENST00000553686 RGS20O76081 388 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 SOGA1O94964 1423 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 S1PR4O95977 384 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 NDUFV2P19404 249 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 RNF19BQ6ZMZ0 732 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 KDM4CQ9H3R0 1056 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 SNAPC4Q5SXM2 1469 aa11.05□□□□□ -0.64
ATXN3-223ENST00000553686 MOXD2PA6NHM9 499 aa11.04□□□□□ -0.64
ATXN3-223ENST00000553686 FDX1P10109 184 aa11.04□□□□□ -0.64
ATXN3-223ENST00000553686 DIXDC1Q155Q3 683 aa11.04□□□□□ -0.64
ATXN3-223ENST00000553686 PRKCSHP14314 528 aaPredicted RBP11.03□□□□□ -0.64
ATXN3-223ENST00000553686 FAM160A2Q8N612 972 aaPredicted RBP11.03□□□□□ -0.64
ATXN3-223ENST00000553686 MAGI1Q96QZ7 1491 aaPredicted RBP11.02□□□□□ -0.65
ATXN3-223ENST00000553686 RNF223E7ERA6 249 aa11.02□□□□□ -0.65
ATXN3-223ENST00000553686 PPEF1O14829 653 aaPredicted RBP11.02□□□□□ -0.65
ATXN3-223ENST00000553686 DNMBPQ6XZF7 1577 aa11.02□□□□□ -0.65
ATXN3-223ENST00000553686 SYMPKQ92797 1274 aaKnown RBP11.01□□□□□ -0.65
ATXN3-223ENST00000553686 PCDHGC3Q9UN70 934 aa11.01□□□□□ -0.65
ATXN3-223ENST00000553686 SYNJ2O15056 1496 aa11□□□□□ -0.65
ATXN3-223ENST00000553686 POLA1P09884 1462 aaPredicted RBP11□□□□□ -0.65
ATXN3-223ENST00000553686 TARBP1Q13395 1621 aaKnown RBP11□□□□□ -0.65
ATXN3-223ENST00000553686 USB1Q9BQ65 265 aaKnown RBP11□□□□□ -0.65
ATXN3-223ENST00000553686 NEUROD2Q15784 382 aa10.99□□□□□ -0.65
ATXN3-223ENST00000553686 FAM117AQ9C073 453 aa10.99□□□□□ -0.65
ATXN3-223ENST00000553686 GRIN2BQ13224 1484 aa10.99□□□□□ -0.65
ATXN3-223ENST00000553686 RAD54L2Q9Y4B4 1467 aa10.99□□□□□ -0.65
ATXN3-223ENST00000553686 TOP2AP11388 1531 aaKnown RBP10.99□□□□□ -0.65
ATXN3-223ENST00000553686 C6orf229H3BNL8 230 aa10.98□□□□□ -0.65
ATXN3-223ENST00000553686 RIC3Q7Z5B4 369 aa10.98□□□□□ -0.65
ATXN3-223ENST00000553686 SPTLC1O15269 473 aa10.97□□□□□ -0.65
ATXN3-223ENST00000553686 RSBN1LQ6PCB5 846 aaPredicted RBP10.97□□□□□ -0.65
ATXN3-223ENST00000553686 PRKD2Q9BZL6 878 aa10.97□□□□□ -0.65
ATXN3-223ENST00000553686 GJA5P36382 358 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 MSS51Q4VC12 460 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 MYSM1Q5VVJ2 828 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 ANKLE1Q8NAG6 615 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 RSPH6AQ9H0K4 717 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 PRDM9Q9NQV7 894 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 PCDHB15Q9Y5E8 787 aa10.96□□□□□ -0.65
ATXN3-223ENST00000553686 CCDC88BA6NC98 1476 aa10.94□□□□□ -0.66
ATXN3-223ENST00000553686 RETREG3Q86VR2 466 aa10.94□□□□□ -0.66
ATXN3-223ENST00000553686 DDRGK1Q96HY6 314 aa10.94□□□□□ -0.66
ATXN3-223ENST00000553686 POLR3EQ9NVU0 708 aa10.94□□□□□ -0.66
ATXN3-223ENST00000553686 ABCC10Q5T3U5 1492 aa10.93□□□□□ -0.66
ATXN3-223ENST00000553686 SLC19A1P41440 591 aa10.92□□□□□ -0.66
ATXN3-223ENST00000553686 BRPF1P55201 1214 aaPredicted RBP10.92□□□□□ -0.66
ATXN3-223ENST00000553686 MTMR2Q13614 643 aa10.92□□□□□ -0.66
ATXN3-223ENST00000553686 CSPP1Q1MSJ5 1256 aa10.92□□□□□ -0.66
ATXN3-223ENST00000553686 LIMD1Q9UGP4 676 aa10.92□□□□□ -0.66
ATXN3-223ENST00000553686 V9GY48 417 aaPredicted RBP10.92□□□□□ -0.66
ATXN3-223ENST00000553686 PLEKHG3A1L390 1219 aa10.91□□□□□ -0.66
ATXN3-223ENST00000553686 MMP16P51512 607 aa10.91□□□□□ -0.66
ATXN3-223ENST00000553686 FCF1Q9Y324 198 aaKnown RBP10.91□□□□□ -0.66
ATXN3-223ENST00000553686 ERCC6L2Q5T890 1561 aa10.9□□□□□ -0.66
ATXN3-223ENST00000553686 LMTK3Q96Q04 1460 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms