RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 AEBP2Q6ZN18 517 aaPredicted RBP27.89■■■□□ 2.06
ATXN3-223ENST00000553686 CHIC1Q5VXU3 224 aa27.06■■□□□ 1.92
ATXN3-223ENST00000553686 PHF23Q9BUL5 403 aaPredicted RBP23.81■■□□□ 1.4
ATXN3-223ENST00000553686 SENP3Q9H4L4 574 aaPredicted RBP23.69■■□□□ 1.38
ATXN3-223ENST00000553686 FOXD1Q16676 465 aa22.01■■□□□ 1.11
ATXN3-223ENST00000553686 PLPPR3Q6T4P5 718 aa21.91■■□□□ 1.1
ATXN3-223ENST00000553686 PPP6R1Q9UPN7 881 aa21.08■□□□□ 0.97
ATXN3-223ENST00000553686 ADRA2BP18089 450 aa21.06■□□□□ 0.96
ATXN3-223ENST00000553686 PIAS4Q8N2W9 510 aaPredicted RBP20.72■□□□□ 0.91
ATXN3-223ENST00000553686 MSH5O43196 834 aa20.35■□□□□ 0.85
ATXN3-223ENST00000553686 PPP4R3CPQ6ZMV5 832 aa19.3■□□□□ 0.68
ATXN3-223ENST00000553686 SCAF1Q9H7N4 1312 aaKnown RBP19.26■□□□□ 0.67
ATXN3-223ENST00000553686 MAPK8IP2Q13387 824 aaPredicted RBP19.17■□□□□ 0.66
ATXN3-223ENST00000553686 DMRT2Q9Y5R5 561 aa18.88■□□□□ 0.61
ATXN3-223ENST00000553686 POTEDQ86YR6 584 aa18.84■□□□□ 0.61
ATXN3-223ENST00000553686 CNKSR2Q8WXI2 1034 aa18.79■□□□□ 0.6
ATXN3-223ENST00000553686 NCBP3Q53F19 620 aaKnown RBP18.76■□□□□ 0.59
ATXN3-223ENST00000553686 KCNA4P22459 653 aa18.66■□□□□ 0.58
ATXN3-223ENST00000553686 NPM3O75607 178 aaKnown RBP18.46■□□□□ 0.55
ATXN3-223ENST00000553686 RNF216Q9NWF9 866 aaPredicted RBP18.45■□□□□ 0.54
ATXN3-223ENST00000553686 HOXD11P31277 338 aaPredicted RBP18.41■□□□□ 0.54
ATXN3-223ENST00000553686 DCAF8L1A6NGE4 600 aa18.13■□□□□ 0.49
ATXN3-223ENST00000553686 DNAJC5BQ9UF47 199 aa17.89■□□□□ 0.45
ATXN3-223ENST00000553686 SLC4A1APQ9BWU0 796 aaKnown RBP17.74■□□□□ 0.43
ATXN3-223ENST00000553686 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.61■□□□□ 0.41
ATXN3-223ENST00000553686 SLC4A2P04920 1241 aa17.48■□□□□ 0.39
ATXN3-223ENST00000553686 RNF39Q9H2S5 420 aa17.43■□□□□ 0.38
ATXN3-223ENST00000553686 U3KPZ7 1027 aaPredicted RBP17.25■□□□□ 0.35
ATXN3-223ENST00000553686 C1QBPQ07021 282 aaKnown RBP17.22■□□□□ 0.35
ATXN3-223ENST00000553686 FOXD4L1Q9NU39 408 aa17.2■□□□□ 0.34
ATXN3-223ENST00000553686 ZBTB22O15209 634 aa17.15■□□□□ 0.34
ATXN3-223ENST00000553686 CACNB1Q02641 598 aaPredicted RBP17.14■□□□□ 0.33
ATXN3-223ENST00000553686 MYCNP04198 464 aaPredicted RBP17.05■□□□□ 0.32
ATXN3-223ENST00000553686 EHMT2Q96KQ7 1210 aa17.05■□□□□ 0.32
ATXN3-223ENST00000553686 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
ATXN3-223ENST00000553686 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
ATXN3-223ENST00000553686 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
ATXN3-223ENST00000553686 SAMD1Q6SPF0 538 aaPredicted RBP16.92■□□□□ 0.3
ATXN3-223ENST00000553686 APLP2Q06481 763 aa16.85■□□□□ 0.29
ATXN3-223ENST00000553686 SPINK5Q9NQ38 1064 aaPredicted RBP16.85■□□□□ 0.29
ATXN3-223ENST00000553686 CAPN15O75808 1086 aa16.8■□□□□ 0.28
ATXN3-223ENST00000553686 TRHP20396 242 aaPredicted RBP16.69■□□□□ 0.26
ATXN3-223ENST00000553686 ZNF219Q9P2Y4 722 aaPredicted RBP16.63■□□□□ 0.25
ATXN3-223ENST00000553686 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
ATXN3-223ENST00000553686 ATXN8OSP0DMR3 200 aa16.62■□□□□ 0.25
ATXN3-223ENST00000553686 DSG3P32926 999 aa16.54■□□□□ 0.24
ATXN3-223ENST00000553686 ABCB7O75027 752 aa16.46■□□□□ 0.23
ATXN3-223ENST00000553686 POLA2Q14181 598 aa16.38■□□□□ 0.21
ATXN3-223ENST00000553686 ZBTB12Q9Y330 459 aaPredicted RBP16.05■□□□□ 0.16
ATXN3-223ENST00000553686 FBLN2P98095 1184 aa15.95■□□□□ 0.14
ATXN3-223ENST00000553686 MKRN4PQ13434 485 aaPredicted RBP15.88■□□□□ 0.13
ATXN3-223ENST00000553686 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
ATXN3-223ENST00000553686 RBM42Q9BTD8 480 aaKnown RBP15.75■□□□□ 0.11
ATXN3-223ENST00000553686 SPDYE2BA6NHP3 402 aa15.62■□□□□ 0.09
ATXN3-223ENST00000553686 SPDYE6P0CI01 402 aa15.62■□□□□ 0.09
ATXN3-223ENST00000553686 SPDYE2Q495Y8 402 aa15.62■□□□□ 0.09
ATXN3-223ENST00000553686 ZNF692Q9BU19 519 aaPredicted RBP15.57■□□□□ 0.08
ATXN3-223ENST00000553686 AKT1S1Q96B36 256 aa15.54■□□□□ 0.08
ATXN3-223ENST00000553686 SPDYE4A6NLX3 237 aa15.47■□□□□ 0.07
ATXN3-223ENST00000553686 SSUH2Q9Y2M2 353 aa15.45■□□□□ 0.06
ATXN3-223ENST00000553686 REM2Q8IYK8 340 aaPredicted RBP15.4■□□□□ 0.06
ATXN3-223ENST00000553686 PABPN1Q86U42 306 aaKnown RBP eCLIP15.34■□□□□ 0.05
ATXN3-223ENST00000553686 FKBP8Q14318 412 aa15.33■□□□□ 0.04
ATXN3-223ENST00000553686 SPDYE1Q8NFV5 336 aaPredicted RBP15.21■□□□□ 0.03
ATXN3-223ENST00000553686 PITPNM1O00562 1244 aa15.2■□□□□ 0.02
ATXN3-223ENST00000553686 CHRDL2Q6WN34 429 aa15.18■□□□□ 0.02
ATXN3-223ENST00000553686 CLEC11AQ9Y240 323 aa15.18■□□□□ 0.02
ATXN3-223ENST00000553686 PROM2Q8N271 834 aa15.13■□□□□ 0.01
ATXN3-223ENST00000553686 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
ATXN3-223ENST00000553686 PRR29P0C7W0 189 aa15.02■□□□□ -0
ATXN3-223ENST00000553686 FXR2P51116 673 aaKnown RBP eCLIP14.96□□□□□ -0.01
ATXN3-223ENST00000553686 PIP4P2Q8N4L2 257 aa14.95□□□□□ -0.02
ATXN3-223ENST00000553686 POTEHQ6S545 545 aa14.89□□□□□ -0.03
ATXN3-223ENST00000553686 PRKAR2AP13861 404 aaKnown RBP14.84□□□□□ -0.03
ATXN3-223ENST00000553686 FBXO3Q9UK99 471 aa14.83□□□□□ -0.04
ATXN3-223ENST00000553686 CHADLQ6NUI6 762 aa14.81□□□□□ -0.04
ATXN3-223ENST00000553686 NISCHQ9Y2I1 1504 aa14.78□□□□□ -0.04
ATXN3-223ENST00000553686 CREBZFQ9NS37 354 aa14.75□□□□□ -0.05
ATXN3-223ENST00000553686 MIER1Q8N108 512 aa14.73□□□□□ -0.05
ATXN3-223ENST00000553686 PLCD3Q8N3E9 789 aa14.67□□□□□ -0.06
ATXN3-223ENST00000553686 FARP1Q9Y4F1 1045 aaPredicted RBP14.65□□□□□ -0.06
ATXN3-223ENST00000553686 PLEKHG5O94827 1062 aa14.64□□□□□ -0.07
ATXN3-223ENST00000553686 VASPP50552 380 aaPredicted RBP14.61□□□□□ -0.07
ATXN3-223ENST00000553686 HAX1O00165 279 aa14.56□□□□□ -0.08
ATXN3-223ENST00000553686 MNX1P50219 401 aaPredicted RBP14.56□□□□□ -0.08
ATXN3-223ENST00000553686 NPM1P06748 294 aaKnown RBP eCLIP14.53□□□□□ -0.08
ATXN3-223ENST00000553686 ZBTB47Q9UFB7 747 aaPredicted RBP14.48□□□□□ -0.09
ATXN3-223ENST00000553686 KLHL34Q8N239 644 aa14.46□□□□□ -0.09
ATXN3-223ENST00000553686 C19orf67A6NJJ6 358 aa14.45□□□□□ -0.1
ATXN3-223ENST00000553686 IFNLR1Q8IU57 520 aaPredicted RBP14.42□□□□□ -0.1
ATXN3-223ENST00000553686 EVX2Q03828 476 aa14.41□□□□□ -0.1
ATXN3-223ENST00000553686 CD44P16070 742 aaKnown RBP14.4□□□□□ -0.1
ATXN3-223ENST00000553686 NUBP1P53384 320 aa14.33□□□□□ -0.12
ATXN3-223ENST00000553686 PAK3O75914 559 aaPredicted RBP14.31□□□□□ -0.12
ATXN3-223ENST00000553686 ZRANB1Q9UGI0 708 aa14.31□□□□□ -0.12
ATXN3-223ENST00000553686 RASEFQ8IZ41 740 aa14.3□□□□□ -0.12
ATXN3-223ENST00000553686 TSPYL2Q9H2G4 693 aaPredicted RBP14.3□□□□□ -0.12
ATXN3-223ENST00000553686 SPOCK2Q92563 424 aa14.28□□□□□ -0.12
ATXN3-223ENST00000553686 SP7Q8TDD2 431 aaPredicted RBP14.24□□□□□ -0.13
ATXN3-223ENST00000553686 DCAF8Q5TAQ9 597 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms