RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 NBPF3Q9H094 633 aa8.78□□□□□ -1
USP28-211ENST00000544272 CFAP99D6REC4 459 aa8.77□□□□□ -1.01
USP28-211ENST00000544272 HMX1Q9NP08 348 aaPredicted RBP8.77□□□□□ -1.01
USP28-211ENST00000544272 NDUFB9Q9Y6M9 179 aa8.77□□□□□ -1.01
USP28-211ENST00000544272 ATP6V1AP38606 617 aa8.76□□□□□ -1.01
USP28-211ENST00000544272 IRF5Q13568 498 aa8.76□□□□□ -1.01
USP28-211ENST00000544272 ZFRQ96KR1 1074 aaKnown RBP8.76□□□□□ -1.01
USP28-211ENST00000544272 POM121CA8CG34 1229 aa8.75□□□□□ -1.01
USP28-211ENST00000544272 HELBQ8NG08 1087 aaPredicted RBP8.75□□□□□ -1.01
USP28-211ENST00000544272 MARVELD3Q96A59 401 aa8.75□□□□□ -1.01
USP28-211ENST00000544272 POTEB3A0JP26 581 aa8.74□□□□□ -1.01
USP28-211ENST00000544272 FAM205CA6NFA0 338 aa8.74□□□□□ -1.01
USP28-211ENST00000544272 POTEBQ6S5H4 581 aa8.74□□□□□ -1.01
USP28-211ENST00000544272 C6orf229H3BNL8 230 aa8.73□□□□□ -1.01
USP28-211ENST00000544272 ACTN4O43707 911 aaKnown RBP8.73□□□□□ -1.01
USP28-211ENST00000544272 TRIM26Q12899 539 aaPredicted RBP8.73□□□□□ -1.01
USP28-211ENST00000544272 KMT5BQ4FZB7 885 aa8.73□□□□□ -1.01
USP28-211ENST00000544272 MORN1Q5T089 497 aa8.73□□□□□ -1.01
USP28-211ENST00000544272 LRRN4Q8WUT4 740 aa8.73□□□□□ -1.01
USP28-211ENST00000544272 NECTIN2Q92692 538 aa8.72□□□□□ -1.01
USP28-211ENST00000544272 GLMNQ92990 594 aa8.72□□□□□ -1.01
USP28-211ENST00000544272 HS3ST6Q96QI5 342 aa8.72□□□□□ -1.01
USP28-211ENST00000544272 HRO43593 1189 aa8.71□□□□□ -1.02
USP28-211ENST00000544272 WASHC4Q2M389 1173 aa8.71□□□□□ -1.02
USP28-211ENST00000544272 RETREG3Q86VR2 466 aa8.71□□□□□ -1.02
USP28-211ENST00000544272 MRPL50Q8N5N7 158 aaKnown RBP8.71□□□□□ -1.02
USP28-211ENST00000544272 SYMPKQ92797 1274 aaKnown RBP8.71□□□□□ -1.02
USP28-211ENST00000544272 CALR3Q96L12 384 aaKnown RBP8.71□□□□□ -1.02
USP28-211ENST00000544272 PDIA4P13667 645 aaKnown RBP8.7□□□□□ -1.02
USP28-211ENST00000544272 DESI1Q6ICB0 168 aa8.7□□□□□ -1.02
USP28-211ENST00000544272 ADGRD1Q6QNK2 874 aa8.7□□□□□ -1.02
USP28-211ENST00000544272 PRR7Q8TB68 274 aa8.7□□□□□ -1.02
USP28-211ENST00000544272 ADAMTS19Q8TE59 1207 aa8.7□□□□□ -1.02
USP28-211ENST00000544272 PODXL2Q9NZ53 605 aa8.7□□□□□ -1.02
USP28-211ENST00000544272 RNF40O75150 1001 aa8.69□□□□□ -1.02
USP28-211ENST00000544272 LSM11P83369 360 aaKnown RBP eCLIP8.69□□□□□ -1.02
USP28-211ENST00000544272 EPS8L1Q8TE68 723 aa8.69□□□□□ -1.02
USP28-211ENST00000544272 LRCH3Q96II8 777 aa8.69□□□□□ -1.02
USP28-211ENST00000544272 SLC27A5Q9Y2P5 690 aa8.69□□□□□ -1.02
USP28-211ENST00000544272 TSC1Q92574 1164 aa8.68□□□□□ -1.02
USP28-211ENST00000544272 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.68□□□□□ -1.02
USP28-211ENST00000544272 PER1O15534 1290 aaPredicted RBP8.67□□□□□ -1.02
USP28-211ENST00000544272 PPP1R15AO75807 674 aaPredicted RBP8.67□□□□□ -1.02
USP28-211ENST00000544272 Q3C1V9 767 aa8.67□□□□□ -1.02
USP28-211ENST00000544272 PUS10Q3MIT2 529 aaKnown RBP8.67□□□□□ -1.02
USP28-211ENST00000544272 TRAIPQ9BWF2 469 aa8.67□□□□□ -1.02
USP28-211ENST00000544272 PRR14Q9BWN1 585 aa8.67□□□□□ -1.02
USP28-211ENST00000544272 SALL2Q9Y467 1007 aaPredicted RBP8.67□□□□□ -1.02
USP28-211ENST00000544272 HDGFL1Q5TGJ6 251 aa8.66□□□□□ -1.02
USP28-211ENST00000544272 VAC14Q08AM6 782 aa8.65□□□□□ -1.02
USP28-211ENST00000544272 LYPD8Q6UX82 237 aa8.65□□□□□ -1.02
USP28-211ENST00000544272 SOWAHBA6NEL2 793 aa8.64□□□□□ -1.03
USP28-211ENST00000544272 NR6A1Q15406 480 aa8.64□□□□□ -1.03
USP28-211ENST00000544272 LCE2DQ5TA82 110 aaPredicted RBP8.64□□□□□ -1.03
USP28-211ENST00000544272 ALG2Q9H553 416 aa8.64□□□□□ -1.03
USP28-211ENST00000544272 BRICD5Q6PL45 260 aa8.63□□□□□ -1.03
USP28-211ENST00000544272 BLOC1S3Q6QNY0 202 aa8.63□□□□□ -1.03
USP28-211ENST00000544272 RNF19BQ6ZMZ0 732 aa8.63□□□□□ -1.03
USP28-211ENST00000544272 ANKK1Q8NFD2 765 aa8.63□□□□□ -1.03
USP28-211ENST00000544272 FAM163AQ96GL9 167 aaPredicted RBP8.63□□□□□ -1.03
USP28-211ENST00000544272 APLP1P51693 650 aa8.62□□□□□ -1.03
USP28-211ENST00000544272 CFAP70Q5T0N1 1121 aa8.62□□□□□ -1.03
USP28-211ENST00000544272 RETREG2Q8NC44 543 aa8.62□□□□□ -1.03
USP28-211ENST00000544272 THAP11Q96EK4 314 aa8.62□□□□□ -1.03
USP28-211ENST00000544272 USB1Q9BQ65 265 aaKnown RBP8.62□□□□□ -1.03
USP28-211ENST00000544272 SOX11P35716 441 aa8.61□□□□□ -1.03
USP28-211ENST00000544272 PPP4CP60510 307 aa8.61□□□□□ -1.03
USP28-211ENST00000544272 SRPK2P78362 688 aaKnown RBP8.61□□□□□ -1.03
USP28-211ENST00000544272 TSR3Q9UJK0 312 aaKnown RBP8.61□□□□□ -1.03
USP28-211ENST00000544272 SCUBE3Q8IX30 993 aa8.6□□□□□ -1.03
USP28-211ENST00000544272 PBXIP1Q96AQ6 731 aa8.6□□□□□ -1.03
USP28-211ENST00000544272 PPP1R12CQ9BZL4 782 aa8.6□□□□□ -1.03
USP28-211ENST00000544272 HPS5Q9UPZ3 1129 aa8.6□□□□□ -1.03
USP28-211ENST00000544272 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
USP28-211ENST00000544272 BCAMP50895 628 aa8.59□□□□□ -1.03
USP28-211ENST00000544272 FMNL1O95466 1100 aaPredicted RBP8.58□□□□□ -1.04
USP28-211ENST00000544272 UCN2Q96RP3 112 aa8.58□□□□□ -1.04
USP28-211ENST00000544272 ABCC9O60706 1549 aa8.58□□□□□ -1.04
USP28-211ENST00000544272 ZBTB7CA1YPR0 619 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 GOLGA8CPA6NN73 597 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 NR1I2O75469 434 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 JUNDP17535 347 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 PNMA1Q8ND90 353 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 PCDHB3Q9Y5E6 796 aa8.57□□□□□ -1.04
USP28-211ENST00000544272 PALM3A6NDB9 673 aaPredicted RBP8.56□□□□□ -1.04
USP28-211ENST00000544272 PTPRNQ16849 979 aa8.56□□□□□ -1.04
USP28-211ENST00000544272 KCTD17Q8N5Z5 321 aa8.56□□□□□ -1.04
USP28-211ENST00000544272 WNT2BQ93097 391 aa8.56□□□□□ -1.04
USP28-211ENST00000544272 ACIN1Q9UKV3 1341 aaKnown RBP8.55□□□□□ -1.04
USP28-211ENST00000544272 NR1H3Q13133 447 aa8.55□□□□□ -1.04
USP28-211ENST00000544272 ANKRD13DQ6ZTN6 518 aa8.55□□□□□ -1.04
USP28-211ENST00000544272 STAC3Q96MF2 364 aa8.55□□□□□ -1.04
USP28-211ENST00000544272 FKBPLQ9UIM3 349 aa8.55□□□□□ -1.04
USP28-211ENST00000544272 ZC3H4Q9UPT8 1303 aaKnown RBP8.54□□□□□ -1.04
USP28-211ENST00000544272 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.54□□□□□ -1.04
USP28-211ENST00000544272 MSS51Q4VC12 460 aa8.54□□□□□ -1.04
USP28-211ENST00000544272 POTEMA6NI47 508 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 FBXO45P0C2W1 286 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 RFX1P22670 979 aa8.53□□□□□ -1.04
USP28-211ENST00000544272 EIF4G2P78344 907 aaKnown RBP eCLIP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms