RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 CHIC1Q5VXU3 224 aa19.78■□□□□ 0.76
USP28-211ENST00000544272 AEBP2Q6ZN18 517 aaPredicted RBP19.74■□□□□ 0.75
USP28-211ENST00000544272 PHF23Q9BUL5 403 aaPredicted RBP17.48■□□□□ 0.39
USP28-211ENST00000544272 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
USP28-211ENST00000544272 PLPPR3Q6T4P5 718 aa16.27■□□□□ 0.2
USP28-211ENST00000544272 FOXD1Q16676 465 aa15.38■□□□□ 0.05
USP28-211ENST00000544272 ADRA2BP18089 450 aa15.24■□□□□ 0.03
USP28-211ENST00000544272 PPP6R1Q9UPN7 881 aa15.23■□□□□ 0.03
USP28-211ENST00000544272 KCNA4P22459 653 aa14.68□□□□□ -0.06
USP28-211ENST00000544272 PIAS4Q8N2W9 510 aaPredicted RBP14.59□□□□□ -0.07
USP28-211ENST00000544272 PPP4R3CPQ6ZMV5 832 aa14.4□□□□□ -0.1
USP28-211ENST00000544272 EHMT2Q96KQ7 1210 aa14.21□□□□□ -0.13
USP28-211ENST00000544272 NCBP3Q53F19 620 aaKnown RBP14.15□□□□□ -0.14
USP28-211ENST00000544272 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
USP28-211ENST00000544272 NPM3O75607 178 aaKnown RBP13.99□□□□□ -0.17
USP28-211ENST00000544272 MSH5O43196 834 aa13.95□□□□□ -0.18
USP28-211ENST00000544272 CNKSR2Q8WXI2 1034 aa13.89□□□□□ -0.19
USP28-211ENST00000544272 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
USP28-211ENST00000544272 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
USP28-211ENST00000544272 MAPK8IP2Q13387 824 aaPredicted RBP13.65□□□□□ -0.22
USP28-211ENST00000544272 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
USP28-211ENST00000544272 ZBTB22O15209 634 aa13.55□□□□□ -0.24
USP28-211ENST00000544272 RNF216Q9NWF9 866 aaPredicted RBP13.5□□□□□ -0.25
USP28-211ENST00000544272 DMRT2Q9Y5R5 561 aa13.38□□□□□ -0.27
USP28-211ENST00000544272 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
USP28-211ENST00000544272 POTEDQ86YR6 584 aa13.34□□□□□ -0.27
USP28-211ENST00000544272 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
USP28-211ENST00000544272 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
USP28-211ENST00000544272 MYCNP04198 464 aaPredicted RBP12.9□□□□□ -0.34
USP28-211ENST00000544272 ATXN8OSP0DMR3 200 aa12.87□□□□□ -0.35
USP28-211ENST00000544272 DCAF8L1A6NGE4 600 aa12.64□□□□□ -0.39
USP28-211ENST00000544272 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP28-211ENST00000544272 ATF5Q9Y2D1 282 aaPredicted RBP12.54□□□□□ -0.4
USP28-211ENST00000544272 U3KPZ7 1027 aaPredicted RBP12.54□□□□□ -0.4
USP28-211ENST00000544272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.41
USP28-211ENST00000544272 HNRNPUL2Q1KMD3 747 aaKnown RBP12.52□□□□□ -0.41
USP28-211ENST00000544272 SAMD1Q6SPF0 538 aaPredicted RBP12.51□□□□□ -0.41
USP28-211ENST00000544272 FKBP8Q14318 412 aa12.46□□□□□ -0.41
USP28-211ENST00000544272 AMER1Q5JTC6 1135 aaPredicted RBP12.32□□□□□ -0.44
USP28-211ENST00000544272 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
USP28-211ENST00000544272 ZNF219Q9P2Y4 722 aaPredicted RBP12.25□□□□□ -0.45
USP28-211ENST00000544272 APLP2Q06481 763 aa12.24□□□□□ -0.45
USP28-211ENST00000544272 RNF39Q9H2S5 420 aa12.04□□□□□ -0.48
USP28-211ENST00000544272 MKRN4PQ13434 485 aaPredicted RBP12.03□□□□□ -0.48
USP28-211ENST00000544272 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
USP28-211ENST00000544272 SPDYE4A6NLX3 237 aa11.96□□□□□ -0.49
USP28-211ENST00000544272 SLC24A1O60721 1099 aa11.96□□□□□ -0.49
USP28-211ENST00000544272 TRHP20396 242 aaPredicted RBP11.95□□□□□ -0.5
USP28-211ENST00000544272 PROM2Q8N271 834 aa11.94□□□□□ -0.5
USP28-211ENST00000544272 FBLN2P98095 1184 aa11.91□□□□□ -0.5
USP28-211ENST00000544272 C1QBPQ07021 282 aaKnown RBP11.91□□□□□ -0.5
USP28-211ENST00000544272 POLA2Q14181 598 aa11.91□□□□□ -0.5
USP28-211ENST00000544272 FBXO3Q9UK99 471 aa11.88□□□□□ -0.51
USP28-211ENST00000544272 CAPN15O75808 1086 aa11.87□□□□□ -0.51
USP28-211ENST00000544272 ZBTB12Q9Y330 459 aaPredicted RBP11.76□□□□□ -0.53
USP28-211ENST00000544272 VASPP50552 380 aaPredicted RBP11.72□□□□□ -0.53
USP28-211ENST00000544272 ABCB7O75027 752 aa11.7□□□□□ -0.54
USP28-211ENST00000544272 DSG3P32926 999 aa11.63□□□□□ -0.55
USP28-211ENST00000544272 IFNLR1Q8IU57 520 aaPredicted RBP11.62□□□□□ -0.55
USP28-211ENST00000544272 CACNB1Q02641 598 aaPredicted RBP11.52□□□□□ -0.57
USP28-211ENST00000544272 SSUH2Q9Y2M2 353 aa11.51□□□□□ -0.57
USP28-211ENST00000544272 SPDYE2BA6NHP3 402 aa11.5□□□□□ -0.57
USP28-211ENST00000544272 SPDYE6P0CI01 402 aa11.5□□□□□ -0.57
USP28-211ENST00000544272 SPDYE2Q495Y8 402 aa11.5□□□□□ -0.57
USP28-211ENST00000544272 ZNF692Q9BU19 519 aaPredicted RBP11.5□□□□□ -0.57
USP28-211ENST00000544272 OSCARQ8IYS5 282 aa11.49□□□□□ -0.57
USP28-211ENST00000544272 PKD2Q13563 968 aa11.46□□□□□ -0.57
USP28-211ENST00000544272 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
USP28-211ENST00000544272 PLCB2Q00722 1185 aa11.38□□□□□ -0.59
USP28-211ENST00000544272 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP28-211ENST00000544272 SPOCK2Q92563 424 aa11.38□□□□□ -0.59
USP28-211ENST00000544272 KLHL34Q8N239 644 aa11.33□□□□□ -0.6
USP28-211ENST00000544272 PLCD3Q8N3E9 789 aa11.28□□□□□ -0.6
USP28-211ENST00000544272 DCAF8L2P0C7V8 631 aa11.25□□□□□ -0.61
USP28-211ENST00000544272 MIER1Q8N108 512 aa11.25□□□□□ -0.61
USP28-211ENST00000544272 ECM2O94769 699 aaPredicted RBP11.22□□□□□ -0.61
USP28-211ENST00000544272 ZBTB47Q9UFB7 747 aaPredicted RBP11.15□□□□□ -0.62
USP28-211ENST00000544272 RGL2O15211 777 aa11.14□□□□□ -0.63
USP28-211ENST00000544272 NPM1P06748 294 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP28-211ENST00000544272 HAP1P54257 671 aaPredicted RBP11.14□□□□□ -0.63
USP28-211ENST00000544272 BBXQ8WY36 941 aaPredicted RBP11.13□□□□□ -0.63
USP28-211ENST00000544272 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
USP28-211ENST00000544272 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.07□□□□□ -0.64
USP28-211ENST00000544272 VSIG10Q8N0Z9 540 aa11.05□□□□□ -0.64
USP28-211ENST00000544272 CIZ1Q9ULV3 898 aaPredicted RBP11.05□□□□□ -0.64
USP28-211ENST00000544272 TRIM41Q8WV44 630 aa11.04□□□□□ -0.64
USP28-211ENST00000544272 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
USP28-211ENST00000544272 RBM42Q9BTD8 480 aaKnown RBP11.03□□□□□ -0.64
USP28-211ENST00000544272 SPDYE1Q8NFV5 336 aaPredicted RBP11.02□□□□□ -0.65
USP28-211ENST00000544272 NUBP1P53384 320 aa10.99□□□□□ -0.65
USP28-211ENST00000544272 PAXIP1Q6ZW49 1069 aaPredicted RBP10.99□□□□□ -0.65
USP28-211ENST00000544272 GSE1Q14687 1217 aa10.96□□□□□ -0.65
USP28-211ENST00000544272 CFAP44Q96MT7 982 aa10.94□□□□□ -0.66
USP28-211ENST00000544272 CREBZFQ9NS37 354 aa10.94□□□□□ -0.66
USP28-211ENST00000544272 CHGAP10645 457 aaKnown RBP10.93□□□□□ -0.66
USP28-211ENST00000544272 REM2Q8IYK8 340 aaPredicted RBP10.93□□□□□ -0.66
USP28-211ENST00000544272 SPRYD3Q8NCJ5 442 aa10.93□□□□□ -0.66
USP28-211ENST00000544272 KDM2AQ9Y2K7 1162 aa10.93□□□□□ -0.66
USP28-211ENST00000544272 MNX1P50219 401 aaPredicted RBP10.92□□□□□ -0.66
USP28-211ENST00000544272 RNF25Q96BH1 459 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms