RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PLCB2Q00722 1185 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 CCDC91Q7Z6B0 441 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 CFAP57Q96MR6 1250 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 TRIM34Q9BYJ4 488 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 TSHZ2Q9NRE2 1034 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 CPSF2Q9P2I0 782 aaKnown RBP4.36□□□□□ -1.71
USP53-205ENST00000509769 MRVI1Q9Y6F6 885 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 MCM5P33992 734 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 SF3B2Q13435 895 aaKnown RBP4.35□□□□□ -1.71
USP53-205ENST00000509769 WDR78Q5VTH9 848 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 PMFBP1Q8TBY8 1022 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 CEP89Q96ST8 783 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 ATAD2Q6PL18 1390 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 ZMYM4Q5VZL5 1548 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 PDE3BQ13370 1112 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 ANKRD18AQ8IVF6 992 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 HDAC5Q9UQL6 1122 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 CFAP53Q96M91 514 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 LUZP1Q86V48 1076 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 NGLY1Q96IV0 654 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 ANO8Q9HCE9 1232 aaPredicted RBP4.35□□□□□ -1.71
USP53-205ENST00000509769 IQGAP2Q13576 1575 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 MAPK8IP3Q9UPT6 1336 aa4.35□□□□□ -1.71
USP53-205ENST00000509769 KIF3CO14782 793 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 IPO7O95373 1038 aaKnown RBP4.34□□□□□ -1.71
USP53-205ENST00000509769 RAPGEF3O95398 923 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 USH1CQ9Y6N9 552 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 KIF27Q86VH2 1401 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 IVLP07476 585 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 TUBB4BP68371 445 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 SEPT6Q14141 434 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 RNF168Q8IYW5 571 aaPredicted RBP4.34□□□□□ -1.71
USP53-205ENST00000509769 TIGD1Q96MW7 591 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 KIF7Q2M1P5 1343 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 ARHGEF12Q9NZN5 1544 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 TDO2P48775 406 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 ZBTB17Q13105 803 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 TPRNQ4KMQ1 711 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 IQCEQ6IPM2 695 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 FEZ1Q99689 392 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 TCHPQ9BT92 498 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 FAM13BQ9NYF5 915 aa4.34□□□□□ -1.71
USP53-205ENST00000509769 POTEB2H3BUK9 544 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 KIF3BO15066 747 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 NPHP1O15259 732 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 KIF20AO95235 890 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 TUBB4AP04350 444 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 RXRBP28702 533 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 ANKRD20A12PQ8NF67 263 aa4.34□□□□□ -1.72
USP53-205ENST00000509769 UPF1Q92900 1129 aaKnown RBP eCLIP4.34□□□□□ -1.72
USP53-205ENST00000509769 VGFO15240 615 aaPredicted RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 NGEFQ8N5V2 710 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 HOOK1Q9UJC3 728 aaKnown RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 EIF4G2P78344 907 aaKnown RBP eCLIP4.33□□□□□ -1.72
USP53-205ENST00000509769 CCDC38Q502W7 563 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 SH2D4BQ5SQS7 431 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 SETD1BQ9UPS6 1966 aaKnown RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 ST18O60284 1047 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 GTF2A1P52655 376 aaPredicted RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 NUCB2P80303 420 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 LMOD3Q0VAK6 560 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 MLECQ14165 292 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 RWDD1Q9H446 243 aaPredicted RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 CHMP5Q9NZZ3 219 aa4.33□□□□□ -1.72
USP53-205ENST00000509769 CGNQ9P2M7 1197 aaKnown RBP4.33□□□□□ -1.72
USP53-205ENST00000509769 SHTN1A0MZ66 631 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 RBM26Q5T8P6 1007 aaKnown RBP4.32□□□□□ -1.72
USP53-205ENST00000509769 SMAP1Q8IYB5 467 aaPredicted RBP4.32□□□□□ -1.72
USP53-205ENST00000509769 RASSF8Q8NHQ8 419 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.32□□□□□ -1.72
USP53-205ENST00000509769 SPATA31A6Q5VVP1 1343 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 SYNMO15061 1565 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 PLEKHD1A6NEE1 506 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 A6NNZ2 444 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 MBD3O95983 291 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 ITGAEP38570 1179 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 TUBB8Q3ZCM7 444 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 HSP90AB3PQ58FF7 597 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 FAM9BQ8IZU0 186 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 CDK13Q14004 1512 aaKnown RBP4.32□□□□□ -1.72
USP53-205ENST00000509769 ERLIN2O94905 339 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 KLHL10Q6JEL2 608 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 FTSJ3Q8IY81 847 aaKnown RBP4.32□□□□□ -1.72
USP53-205ENST00000509769 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.32□□□□□ -1.72
USP53-205ENST00000509769 SEPT11Q9NVA2 429 aaKnown RBP4.32□□□□□ -1.72
USP53-205ENST00000509769 AGLP35573 1532 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 MIER1Q8N108 512 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 SLC26A8Q96RN1 970 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 CENPHQ9H3R5 247 aa4.32□□□□□ -1.72
USP53-205ENST00000509769 EIF3AQ14152 1382 aaKnown RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 RNF17Q9BXT8 1623 aaKnown RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 NBPF1Q3BBV0 1214 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 ABCA9Q8IUA7 1624 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 FMNL3Q8IVF7 1028 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 CCDC50Q8IVM0 306 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 RNF214Q8ND24 703 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 FAM184BQ9ULE4 1060 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 DYNC1I1O14576 645 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 IPO8O15397 1037 aaKnown RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 EZRP15311 586 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms